View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791-INSERTION-12 (Length: 481)

Name: NF0791-INSERTION-12
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791-INSERTION-12
NF0791-INSERTION-12
[»] chr3 (5 HSPs)
chr3 (8-408)||(42084760-42085165)
chr3 (407-481)||(42085219-42085293)
chr3 (307-371)||(21127742-21127807)
chr3 (307-371)||(43291871-43291936)
chr3 (299-379)||(34935729-34935809)
[»] chr5 (3 HSPs)
chr5 (299-387)||(12974244-12974332)
chr5 (297-380)||(40579681-40579764)
chr5 (326-380)||(38274991-38275045)
[»] chr8 (1 HSPs)
chr8 (298-380)||(33802582-33802664)
[»] chr1 (6 HSPs)
chr1 (298-380)||(47490277-47490359)
chr1 (299-380)||(25948200-25948281)
chr1 (296-382)||(5298749-5298835)
chr1 (307-371)||(2736182-2736247)
chr1 (307-371)||(39959850-39959915)
chr1 (307-371)||(1076197-1076262)
[»] chr7 (9 HSPs)
chr7 (299-379)||(42617403-42617483)
chr7 (307-371)||(28545504-28545569)
chr7 (307-371)||(28549919-28549984)
chr7 (307-371)||(28556087-28556152)
chr7 (307-371)||(47958511-47958576)
chr7 (307-371)||(48253863-48253928)
chr7 (307-371)||(24142897-24142962)
chr7 (307-360)||(36977679-36977732)
chr7 (308-371)||(2415883-2415947)
[»] scaffold0648 (1 HSPs)
scaffold0648 (299-380)||(7745-7826)
[»] chr4 (3 HSPs)
chr4 (299-380)||(43930110-43930191)
chr4 (307-371)||(33075804-33075869)
chr4 (308-371)||(55899070-55899134)
[»] chr2 (1 HSPs)
chr2 (307-371)||(36011894-36011959)
[»] chr6 (1 HSPs)
chr6 (308-371)||(30809870-30809934)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Original strand, 42084760 - 42085165
Alignment:
Q  8 caaaacccattggagacacacttagaggccccatcttgagcttttggttttgggtggatggccatagggaagggaatttgaaaggaaaagatggtaaagg 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42084760 caaaacccattggagaaacacttagaggccccatcttgagcttttggttttgggtggatggccatagggaagggaatttgaaagtaaaagatggtaaagg 42084859  T
Q  108 gttgttaatgtttgaggaaccaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttggtagttaat 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42084860 gttgttaatgtttgaggaacaaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttggtagttaat 42084959  T
Q  208 tcgttgtgtggtggtaactaactgttatggatcagttttgtcgatt----aagaaaatagtttaatattatgaataagaaaatgnnnnnnntaattgaca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||       |||||||||    
T  42084960 tcgttgtgtggtggtaactaactgttatggatcagttttgtcgattaagaaagaaaatagtttaatattatgaataagaaaatgaaaaaaataattgaca 42085059  T
Q  304 gctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctttgctgattat-ttgtctgatctt 402  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||    
T  42085060 gctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgctgattatgtcgtctgatatt 42085159  T
Q  403 ttatac 408  Q
    ||||||    
T  42085160 ttatac 42085165  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 407 - 481
Target Start/End: Original strand, 42085219 - 42085293
Alignment:
Q  407 accgtaacttgttgaatcttggagaaaaagtacacaccataatagaaataacagtgaaataaatcggtatactat 481  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42085219 accgtaagttgttgaatcttggagaaaaagtacacaccataatagaaataacagtgaaataaatcggtatactat 42085293  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 21127742 - 21127807
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  21127742 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 21127807  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 43291871 - 43291936
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  43291871 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 43291936  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 34935809 - 34935729
Alignment:
Q  299 tgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtct 379  Q
    |||| |||||| |||||||||||||||||||||  ||| ||| |||||||||  ||||||||||||| |||||||| ||||    
T  34935809 tgacggctgtgagatttgaacccacgccctttcaaaccggagcctaaatctgatgccttagaccacttggccaaaccgtct 34935729  T

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Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 299 - 387
Target Start/End: Complemental strand, 12974332 - 12974244
Alignment:
Q  299 tgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctttgctgat 387  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  12974332 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgttgat 12974244  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 40579764 - 40579681
Alignment:
Q  297 attgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctt 380  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40579764 attgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 40579681  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 38274991 - 38275045
Alignment:
Q  326 cctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctt 380  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  38274991 cctttcggaccagagcctaaatctggcgccgtagaccactcggccaaactgtctt 38275045  T

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Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 33802582 - 33802664
Alignment:
Q  298 ttgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33802582 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 33802664  T

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Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 47490277 - 47490359
Alignment:
Q  298 ttgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47490277 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 47490359  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 25948281 - 25948200
Alignment:
Q  299 tgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctt 380  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25948281 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 25948200  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 382
Target Start/End: Complemental strand, 5298835 - 5298749
Alignment:
Q  296 aattgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctttg 382  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  5298835 aattgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtctttg 5298749  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 2736247 - 2736182
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  2736247 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 2736182  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 39959915 - 39959850
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  39959915 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 39959850  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 1076262 - 1076197
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||| ||||||||||| |||||||||    
T  1076262 gtgggatttgaacccacgccctttcggaccagaaccttaatctgacgccttagaccaactcggcca 1076197  T

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Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 42617403 - 42617483
Alignment:
Q  299 tgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtct 379  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42617403 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 42617483  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 28545569 - 28545504
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  28545569 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 28545504  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 28549984 - 28549919
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  28549984 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 28549919  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 28556152 - 28556087
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  28556152 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 28556087  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 47958511 - 47958576
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  47958511 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 47958576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 48253928 - 48253863
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  48253928 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 48253863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 24142897 - 24142962
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    ||||||||||||||||| |||| ||||||||||  || |||||||||||||||||| |||||||||    
T  24142897 gtgggatttgaacccacaccctatcggaccagaaccttaatctggcgccttagaccaactcggcca 24142962  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 36977679 - 36977732
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttaga 360  Q
    |||||||||||||||| |||||||| | |||||| ||||||||  |||||||||    
T  36977679 gtgggatttgaacccatgccctttcaggccagagcctaaatctaacgccttaga 36977732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 2415947 - 2415883
Alignment:
Q  308 tgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    ||||||| ||||||| |||||||||||||||   || || ||||||||||||||| |||||||||    
T  2415947 tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca 2415883  T

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Target: scaffold0648 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 7745 - 7826
Alignment:
Q  299 tgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctt 380  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  7745 tgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtctt 7826  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 43930110 - 43930191
Alignment:
Q  299 tgacagctgtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagaccactcggccaaactgtctt 380  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  43930110 tgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtctt 43930191  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 33075869 - 33075804
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  33075869 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 33075804  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 371
Target Start/End: Original strand, 55899070 - 55899134
Alignment:
Q  308 tgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    ||||||| ||||||| |||||||||||||||   || || ||||||||||||||| |||||||||    
T  55899070 tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca 55899134  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 36011959 - 36011894
Alignment:
Q  307 gtgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||    
T  36011959 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 36011894  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 371
Target Start/End: Original strand, 30809870 - 30809934
Alignment:
Q  308 tgggatttgaacccacgccctttcggaccagagtctaaatctggcgccttagacc-actcggcca 371  Q
    ||||||| ||||||| |||||||||||||||   || || ||||||||||||||| |||||||||    
T  30809870 tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca 30809934  T

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