View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791-INSERTION-14 (Length: 746)

Name: NF0791-INSERTION-14
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791-INSERTION-14
NF0791-INSERTION-14
[»] chr1 (4 HSPs)
chr1 (135-541)||(23202814-23203220)
chr1 (8-141)||(23193968-23194096)
chr1 (592-728)||(23203409-23203547)
chr1 (557-600)||(23203272-23203315)
[»] chr5 (9 HSPs)
chr5 (8-183)||(32254802-32254973)
chr5 (273-440)||(32255022-32255187)
chr5 (8-58)||(32236353-32236403)
chr5 (8-58)||(32248547-32248597)
chr5 (467-522)||(32264478-32264533)
chr5 (692-727)||(32264762-32264797)
chr5 (557-635)||(32264597-32264675)
chr5 (369-450)||(32248852-32248935)
chr5 (467-524)||(32255415-32255472)
[»] chr6 (1 HSPs)
chr6 (170-232)||(21847752-21847814)


Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 135 - 541
Target Start/End: Original strand, 23202814 - 23203220
Alignment:
Q  135 ggttttgtcgttagtcgtgttattgaatcacactcttttccttcatgaggttttatcttactagattttcttgataagatttttaacgaggcagttgtcc 234  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||    
T  23202814 ggttttgttgttagtcgtgttattgaatcaaactctttaccttcatgaggttttatcctactaggttttcttgataagatttttaacgaggcagttttcc 23202913  T
Q  235 aaattctttgtagttttcttgggttttggagatatattttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaattta 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23202914 aaattctttgtagttttcttgggttttggagatatattttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaattta 23203013  T
Q  335 ggatctcaacctagctaggatgtcaagcttattatctaatgcccatgcactcaaatttttgcaaagttgagcatgacttccatggaggaagaatgcaata 434  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||    
T  23203014 ggatctcaacctagttaggatgtcaagctcatcatctaatgcccatgcactctaatttttgcaaagttgaacatgacttccatggaggatgaatgcaata 23203113  T
Q  435 aacttattatagaatccttaaacaaatgtcacctggcttatcaaatgtcacatggggctcaacacattatagtgctccgtgcggtcattaatattagggc 534  Q
     |||||| ||||||| |||||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23203114 tacttatcatagaattcttaaacaaatgtcacttggcttatcaaatgtcaactggggctcaacacattacagtgctccgtgcggtcattaatattagggc 23203213  T
Q  535 ggagttt 541  Q
    |||||||    
T  23203214 ggagttt 23203220  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 23193968 - 23194096
Alignment:
Q  8 agctcttccttctcctcatctgaattaaatgttgaaattcaaactgtattaatgtcaaggtgtatcaagaagacttctttagaaagttacaaatttcgat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  23193968 agctcttccttctcctcatctgaattaaatgttgaaattcaaact-----aatgtcaaggtgtatcaacaagacttctttagaaagttacagatttagat 23194062  T
Q  108 gatggttagttgctttattttgagtttggttttg 141  Q
    ||||||||||||||||||||||||||||||||||    
T  23194063 gatggttagttgctttattttgagtttggttttg 23194096  T

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Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 592 - 728
Target Start/End: Original strand, 23203409 - 23203547
Alignment:
Q  592 cattaaggaagagagggccttggttgaatctacatcttttttatgaaccgacaagggcaaacccagacacatacaatggaa-ggaccagctacacatact 690  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||||| | ||||| |||||||||||| ||||||||||||||||||    
T  23203409 cattaaggaggagagggccttgggtgaatctacatcttgtttatgaactgacaagggcaatctcagactcatacaatggaagggaccagctacacatact 23203508  T
Q  691 tgataaaattat-aagatgcaaataattgcaagtaacta 728  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  23203509 tgataaaattataaagatgcaaataattgcaagtaacta 23203547  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 23203272 - 23203315
Alignment:
Q  557 tgagcttcacaaactttcccctaaacatagactaacattaagga 600  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  23203272 tgagcttcacaaactttcccctaaacatagaccagcattaagga 23203315  T

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Target: chr5 (Bit Score: 93; Significance: 7e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 32254802 - 32254973
Alignment:
Q  8 agctcttccttctcctcatctgaattaaatgttgaaattcaaactgtattaatgtcaaggtgtatc-aagaagacttctttagaaagttacaaatttcga 106  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| | |||| ||    
T  32254802 agctcttccttctcctcatcctaattaaatgttgaaattcaaactgtattaatatcaaggtgtatcaaagaaaacttctttagaaagttatagatttaga 32254901  T
Q  107 tgatggttagttgctttattttgagtttggttttgtcgttagtcgtgttattgaatcacactcttttccttcatgag 183  Q
    ||||||||||||| ||||||||||||||||| |||| | ||     ||||||||||  ||||||||| |||||||||    
T  32254902 tgatggttagttgttttattttgagtttggtcttgttgcta-----gttattgaattgcactctttttcttcatgag 32254973  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 273 - 440
Target Start/End: Original strand, 32255022 - 32255187
Alignment:
Q  273 ttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaacctagctaggatgtcaagcttattatcta 372  Q
    |||||||||||||| |  |||||||||||||||| |||||||||||||||||| ||||||| || | ||||| ||  |||||||||||  || |  |||     
T  32255022 ttgtatttctttatgt--caataaatttgttagggtgttgcaaatgataggtagtgaattttgggtgtcaacttaattaggatgtcaactttttcttctg 32255119  T
Q  373 atgcccatgcactcaaatttttgcaaagttgagcatgacttccatggaggaagaatgcaataaactta 440  Q
    ||| |||||||||| ||| ||||||||||||| ||||| | |||||||||| |||||||||| |||||    
T  32255120 atgtccatgcactctaatatttgcaaagttgaacatgattcccatggaggaggaatgcaatagactta 32255187  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 32236353 - 32236403
Alignment:
Q  8 agctcttccttctcctcatctgaattaaatgttgaaattcaaactgtatta 58  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  32236353 agctcttccttctcctcatctgaattaaatgttgaaattcaatttgtatta 32236403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 32248547 - 32248597
Alignment:
Q  8 agctcttccttctcctcatctgaattaaatgttgaaattcaaactgtatta 58  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  32248547 agctcttccttctcctcatctgaattaaatgttgaaattcaatttgtatta 32248597  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 467 - 522
Target Start/End: Original strand, 32264478 - 32264533
Alignment:
Q  467 ctggcttatcaaatgtcacatggggctcaacacattatagtgctccgtgcggtcat 522  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||||||| |||||    
T  32264478 ctggcttatcaaatgtttctcggggctcaacacattatagtgctccgtgcagtcat 32264533  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 692 - 727
Target Start/End: Original strand, 32264762 - 32264797
Alignment:
Q  692 gataaaattataagatgcaaataattgcaagtaact 727  Q
    ||||||||||||||||||||||||||||||||||||    
T  32264762 gataaaattataagatgcaaataattgcaagtaact 32264797  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 635
Target Start/End: Original strand, 32264597 - 32264675
Alignment:
Q  557 tgagcttcacaaactttcccctaaacatagactaacattaaggaagagagggccttggttgaatctacatcttttttat 635  Q
    |||||| |||||| |||||| |||||  |||| ||||||||||  ||||||| |||||||||||||||| ||| |||||    
T  32264597 tgagctacacaaattttcccttaaactaagaccaacattaagggggagagggacttggttgaatctacaacttgtttat 32264675  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 450
Target Start/End: Original strand, 32248852 - 32248935
Alignment:
Q  369 tctaatgcccatgcactcaaatttttgcaaagttgagcatgacttccat--ggaggaagaatgcaataaacttattatagaatc 450  Q
    ||||||| |||||||||| || |||||||||||||| ||||| ||||||   ||||| |||||||||| |||| | ||||||||    
T  32248852 tctaatgtccatgcactctaaattttgcaaagttgaacatgatttccatcgagaggaggaatgcaatagacttgtcatagaatc 32248935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 32255415 - 32255472
Alignment:
Q  467 ctggcttatcaaatgtcacatggggctcaacacattatagtgctccgtgcggtcatta 524  Q
    |||||||||||||||||||  |||||||||||||||  | |||| | |||||||||||    
T  32255415 ctggcttatcaaatgtcaccaggggctcaacacattgcaatgctacatgcggtcatta 32255472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 21847814 - 21847752
Alignment:
Q  170 ttttccttcatgaggttttatcttactagattttcttgataagatttttaacgaggcagttgt 232  Q
    ||||||||||| | ||||||||| | |||||||||||| |||| ||||||| |||||||||||    
T  21847814 ttttccttcatcaagttttatctcaatagattttcttgttaaggtttttaatgaggcagttgt 21847752  T

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