View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791-INSERTION-15 (Length: 312)
Name: NF0791-INSERTION-15
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791-INSERTION-15 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 1726779 - 1726483
Alignment:
| Q |
6 |
caataatactttgcataaaacttgttagataagtcaattt-atggtgcacaagtgaaagagtagtgaaacaaattttgcatcatgcgcaagttagttttt |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
1726779 |
caataatactttgcgtaaaacttgttagataagtcaattttatgatgcacaagtgaaa-----------caaatcttgcatcatgcgcaaattagttttt |
1726691 |
T |
|
| Q |
105 |
actattaaatcaataaaacttatcattaaatcaaacatgatgtgactttttgatccaataataaaaacatgttagaaatgatcaaaataactttttattc |
204 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1726690 |
agtattgaatcaataaaacttatcattaaatcaaacatgatgtgactttttgatccaataataaaaacatgttagaaatgatcaaaataactttttattc |
1726591 |
T |
|
| Q |
205 |
attgttggtgaagtaattattacaataaaatttgatcatgtcgttgtacccnnnnnnnnctggatcatatcacaaatagttctaaaagttatcactgaac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1726590 |
attgttggtgaagtaattattacaataaaacttgatcatgtcgttgtacccaaaaaaaactggatcatatcacaaatagttctaaaagttatcactgaac |
1726491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 13004719 - 13004779
Alignment:
| Q |
75 |
aaattttgcatcatgcgcaagttagtttttactattaaatcaataaaacttatcattaaat |
135 |
Q |
| |
|
|||||||||||||| | |||||| ||||| || |||||||||||||| |||| |||||||| |
|
|
| T |
13004719 |
aaattttgcatcattcacaagtttgttttcaccattaaatcaataaaccttaccattaaat |
13004779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 38406472 - 38406419
Alignment:
| Q |
78 |
ttttgcatcatgcgcaagttagtttttactattaaatcaataaaacttatcatt |
131 |
Q |
| |
|
|||||||| || | |||||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
38406472 |
ttttgcattatacacaagttcgtttttactattgaatcaataaatcttatcatt |
38406419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 37439849 - 37439781
Alignment:
| Q |
67 |
agtgaaacaaattttgcatcatgcgcaagttagtttttactattaaatcaataaaacttatcattaaat |
135 |
Q |
| |
|
||||| ||| ||||| |||||| | |||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
37439849 |
agtgacacatatttttcatcatacataagttagtttctactattaaatcaataaattttataattaaat |
37439781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University