View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791-INSERTION-16 (Length: 671)

Name: NF0791-INSERTION-16
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791-INSERTION-16
NF0791-INSERTION-16
[»] chr4 (2 HSPs)
chr4 (65-671)||(23429160-23429767)
chr4 (7-64)||(23429894-23429951)


Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 65 - 671
Target Start/End: Complemental strand, 23429767 - 23429160
Alignment:
Q  65 tcgtgtgcattgacaatgctaaagttttgtgggacaaactgtgtcaccaattcactaaatgtactcatttcaaacgttttgatctccttnnnnnnnntca 164  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||| |||||||||||||        |||    
T  23429767 tcgtgtacattgacaatgctaaagttttgtgggacaacctgtgtcaccaatttaccaaatttactcatttcaaactttttgatctccttcaagaaattca 23429668  T
Q  165 ctccatgaaacaaggagaatgatatgttaatgagtttttcaccgacacaaaa-ttgtttgtgaaaatttagaggatttgcgttcaatccctatatgttca 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    ||     
T  23429667 ctccatgaaacaaggagaatgatatgttaatgagtttttcaccgacacaaaaattgtttgtgaaaatttagagaatttgcgttcaatccctatccaatct 23429568  T
Q  264 tgcaatgttagatgtaattgtgatgcatttagaattatgcacaaccaatgcaagattgagtatgacatccgttttttgaaagggttatatgatgattata 363  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  23429567 tgcaatgttagatgcaattgtgatgcctttagaattatgcgcaaccaatgcgagattgagtatgtcatccgttttctgaaagggttatatgttgattata 23429468  T
Q  364 gcatagccagatctcaaatcttactcatgaaacatttgccttcaatttgtgagattttctcacttattattaagcaaaaatatcatttggctagtacttc 463  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  23429467 gcatagccagatctcaaatcttgctcatgaaacctttgccttcaatttgtgagattttctcccttattattaagcaaaaagatcatttggccagtacttc 23429368  T
Q  464 atcctttcagcctatagtcttttataatgtaagagaaagacctacataaggtagaggcattttttacccgtgaggtcgtggaagatttcatgcaggaggt 563  Q
    ||||||| |||||| |||||| |||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||| |||| |||| |||||||||| ||    
T  23429367 atccttttagcctacagtcttgtataatgtaaaagaaatacctacatatggtagagacattttttacccgtgaggttgtggcagatctcatgcaggaagt 23429268  T
Q  564 catggtcataaaaaataatgcactttttattctagacttggtcacactattaagcattgttatttcaagcacgactttcctccgggttataaaccacgat 663  Q
    || ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23429267 cacggtcataaaaaataatgcactttctattctagacttggtcgcactattaagcattgttatttcaagcacgactttcctccgggttataaaccacaat 23429168  T
Q  664 atcagtcc 671  Q
    ||| ||||    
T  23429167 atcggtcc 23429160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 23429951 - 23429894
Alignment:
Q  7 aaataacacaaattaccattcattgagccgcaatatgaaatgttcctcatatcaaaga 64  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23429951 aaataacacaaattaccattcatggagccgcaatatgaaatgttcctcatatcaaaga 23429894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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