View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791-INSERTION-17 (Length: 84)

Name: NF0791-INSERTION-17
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791-INSERTION-17
NF0791-INSERTION-17
[»] chr8 (7 HSPs)
chr8 (14-58)||(12156772-12156816)
chr8 (17-68)||(2954342-2954393)
chr8 (17-68)||(2954625-2954676)
chr8 (8-58)||(5981550-5981600)
chr8 (8-58)||(5981841-5981891)
chr8 (14-58)||(14028325-14028369)
chr8 (8-67)||(29103322-29103381)
[»] chr3 (13 HSPs)
chr3 (8-56)||(23162187-23162235)
chr3 (14-58)||(16871073-16871117)
chr3 (14-58)||(17732018-17732062)
chr3 (14-58)||(19033249-19033293)
chr3 (14-58)||(43978689-43978733)
chr3 (14-68)||(43481579-43481632)
chr3 (8-58)||(40195928-40195978)
chr3 (8-58)||(43978977-43979027)
chr3 (9-58)||(23162458-23162507)
chr3 (14-58)||(16869626-16869670)
chr3 (18-58)||(54017666-54017706)
chr3 (18-65)||(43755561-43755608)
chr3 (14-68)||(53981527-53981579)
[»] chr7 (10 HSPs)
chr7 (14-67)||(11776461-11776514)
chr7 (21-68)||(35589834-35589881)
chr7 (14-68)||(11776178-11776232)
chr7 (8-68)||(23578112-23578172)
chr7 (14-58)||(48071386-48071430)
chr7 (9-67)||(22561945-22562003)
chr7 (21-67)||(45100175-45100221)
chr7 (14-58)||(5862797-5862841)
chr7 (23-55)||(8802496-8802528)
chr7 (14-58)||(27391883-27391926)
[»] chr6 (5 HSPs)
chr6 (14-58)||(21130171-21130215)
chr6 (8-56)||(7301408-7301456)
chr6 (14-58)||(22605369-22605413)
chr6 (26-58)||(6250084-6250116)
chr6 (18-58)||(21297251-21297291)
[»] chr4 (6 HSPs)
chr4 (17-76)||(26473719-26473775)
chr4 (14-58)||(1868051-1868095)
chr4 (9-56)||(47681161-47681208)
chr4 (14-56)||(47680623-47680665)
chr4 (14-60)||(48635159-48635205)
chr4 (14-64)||(51681532-51681582)
[»] chr5 (6 HSPs)
chr5 (15-58)||(41340279-41340322)
chr5 (14-58)||(3294930-3294974)
chr5 (14-58)||(5963683-5963727)
chr5 (14-58)||(14168934-14168978)
chr5 (14-58)||(34103554-34103598)
chr5 (15-58)||(41341456-41341498)
[»] chr1 (10 HSPs)
chr1 (30-68)||(43834485-43834523)
chr1 (14-67)||(5821717-5821770)
chr1 (9-58)||(15327856-15327905)
chr1 (14-67)||(26231767-26231820)
chr1 (8-58)||(4392018-4392068)
chr1 (14-56)||(27686638-27686680)
chr1 (9-58)||(31973444-31973493)
chr1 (14-58)||(4392306-4392350)
chr1 (14-58)||(25294901-25294945)
chr1 (14-54)||(34665923-34665963)
[»] chr2 (2 HSPs)
chr2 (14-68)||(19548134-19548188)
chr2 (14-58)||(13792608-13792652)


Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.000000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 12156772 - 12156816
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  12156772 ttcctccattcctaatcgatgtgggacataatcactcacacttga 12156816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 2954342 - 2954393
Alignment:
Q  17 ctccattcctaatcgatgtgggatataatcactcacacttgaaacccaacaa 68  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  2954342 ctccattcctagtcgatgtgggaaataatcactcacacttgaaactcaacaa 2954393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 2954625 - 2954676
Alignment:
Q  17 ctccattcctaatcgatgtgggatataatcactcacacttgaaacccaacaa 68  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||||||    
T  2954625 ctccattcctagtctatgtgggacataatcactcacacttgaaacccaacaa 2954676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 5981550 - 5981600
Alignment:
Q  8 caacggttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||| || ||||||||||| ||||||||||| ||||||||||||||||||    
T  5981550 caacgttttctccattcctagtcgatgtgggacataatcactcacacttga 5981600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 5981841 - 5981891
Alignment:
Q  8 caacggttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||| |||||||||||||||| ||||||||| |||||| |||||||||||    
T  5981841 caacgtttcctccattcctaattgatgtgggacataatccctcacacttga 5981891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 14028369 - 14028325
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||| ||||||| ||||||| ||| ||||||||||||||||||    
T  14028369 ttcctctattcctagtcgatgtaggacataatcactcacacttga 14028325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 29103322 - 29103381
Alignment:
Q  8 caacggttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaaca 67  Q
    ||||| |||||||||||||| |||||||| || || || |||||||||| |||| |||||    
T  29103322 caacgtttcctccattcctagtcgatgtgagacatgattactcacacttaaaactcaaca 29103381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.000000000000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 23162235 - 23162187
Alignment:
Q  8 caacggttcctccattcctaatcgatgtgggatataatcactcacactt 56  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  23162235 caacgtttcctccattcctaatcgatgtgggacataatcactcacactt 23162187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 16871073 - 16871117
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  16871073 ttcctccattccaaatcgatgtgggacataatcactcacacttga 16871117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 17732018 - 17732062
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  17732018 ttcctccattcctagtcgatgtgggacataatcactcacacttga 17732062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 19033249 - 19033293
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  19033249 ttcctccattcctagtcgatgtgggacataatcactcacacttga 19033293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 43978689 - 43978733
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  43978689 ttcctccattcctagtcgatgtgggacataatcactcacacttga 43978733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 43481632 - 43481579
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaacaa 68  Q
    |||||||||||||| |||||||| || ||||||||||||||||| ||||||||||    
T  43481632 ttcctccattcctagtcgatgtgagacataatcactcacacttg-aacccaacaa 43481579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 40195928 - 40195978
Alignment:
Q  8 caacggttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||| |||||||||||||| ||||||||  | ||||||||||||||||||    
T  40195928 caacgtttcctccattcctagtcgatgtgaaacataatcactcacacttga 40195978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 43978977 - 43979027
Alignment:
Q  8 caacggttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||| ||||||||||| || ||||||||||| ||||||||||||| ||||    
T  43978977 caacgtttcctccattcttagtcgatgtgggacataatcactcacatttga 43979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 23162458 - 23162507
Alignment:
Q  9 aacggttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||| ||| ||||||| |||||||| ||||| ||||||||||||||||||    
T  23162458 aacgtttcatccattcataatcgatatgggacataatcactcacacttga 23162507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 16869626 - 16869670
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||| ||||||||||||  ||||| ||||||||||||||||||    
T  16869626 ttcctctattcctaatcgacatgggacataatcactcacacttga 16869670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 54017666 - 54017706
Alignment:
Q  18 tccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||| |||||||| || ||||||||||||||||||    
T  54017666 tccattcctagtcgatgtgagacataatcactcacacttga 54017706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 43755608 - 43755561
Alignment:
Q  18 tccattcctaatcgatgtgggatataatcactcacacttgaaacccaa 65  Q
    ||||||| ||||||||||||||  |||| ||| |||||||||||||||    
T  43755608 tccattcataatcgatgtgggacgtaattacttacacttgaaacccaa 43755561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 53981579 - 53981527
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaacaa 68  Q
    |||||||||| ||| |||||||||||  ||||||||  |||||||||||||||||    
T  53981579 ttcctccatttctagtcgatgtgggacttaatcact--cacttgaaacccaacaa 53981527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 11776461 - 11776514
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaaca 67  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||| |||||||    
T  11776461 ttcctccattcctagttgatgtgggacataatcactcacacttgaatcccaaca 11776514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 35589834 - 35589881
Alignment:
Q  21 attcctaatcgatgtgggatataatcactcacacttgaaacccaacaa 68  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||    
T  35589834 attcctaattgatgtgagacataatcactcacacttgaaacccaacaa 35589881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 11776178 - 11776232
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaacaa 68  Q
    |||||||||||||| | ||||||||| ||||||| ||||||||||| ||||||||    
T  11776178 ttcctccattcctagttgatgtgggacataatcattcacacttgaatcccaacaa 11776232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 23578112 - 23578172
Alignment:
Q  8 caacggttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaacaa 68  Q
    ||||| || ||||||| ||| |||||||||||  ||||||||||||| |||||||||||||    
T  23578112 caacgttttctccatttctactcgatgtgggacttaatcactcacacatgaaacccaacaa 23578172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 48071430 - 48071386
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||    
T  48071430 ttcctccattcctagtcgatgtgggacataatcactgacacttga 48071386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 22562003 - 22561945
Alignment:
Q  9 aacggttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaaca 67  Q
    |||| |||||||||||||| ||||| |  || |||||||||||||||| ||||||||||    
T  22562003 aacgtttcctccattcctattcgatatatgacataatcactcacacttaaaacccaaca 22561945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 45100221 - 45100175
Alignment:
Q  21 attcctaatcgatgtgggatataatcactcacacttgaaacccaaca 67  Q
    ||||||| || |||||| | |||||||||||||||||||||||||||    
T  45100221 attcctagtcaatgtggaacataatcactcacacttgaaacccaaca 45100175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 5862797 - 5862841
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||||| || |||||| || ||||||||||||||||||||||||    
T  5862797 ttcctccttttctaatcaatttgggatataatcactcacacttga 5862841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 8802528 - 8802496
Alignment:
Q  23 tcctaatcgatgtgggatataatcactcacact 55  Q
    ||||||||||||||||| |||||||||||||||    
T  8802528 tcctaatcgatgtgggacataatcactcacact 8802496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 27391883 - 27391926
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||    
T  27391883 ttcctccattcctatt-gatgtgggacataatcactcacacttga 27391926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 21130171 - 21130215
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  21130171 ttcctccattcctagtcgatgtgggacataatcactcacacttga 21130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 7301408 - 7301456
Alignment:
Q  8 caacggttcctccattcctaatcgatgtgggatataatcactcacactt 56  Q
    ||||| |||||||||| ||| ||||||||||| ||||||||||||||||    
T  7301408 caacgtttcctccatttctagtcgatgtgggacataatcactcacactt 7301456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 22605369 - 22605413
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||    
T  22605369 ttcctccattcctagtcgatgtggaacataatcactcacacttga 22605413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 6250116 - 6250084
Alignment:
Q  26 taatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||||||||||||||||    
T  6250116 taatcgatgtgggacataatcactcacacttga 6250084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 21297251 - 21297291
Alignment:
Q  18 tccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||| ||||||||||| | ||||||||||||||||    
T  21297251 tccattcctagtcgatgtgggacacaatcactcacacttga 21297291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 26473719 - 26473775
Alignment:
Q  17 ctccattcctaatcgatgtgggatataatcactcacacttgaaacccaacaagttgaaat 76  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||||||    
T  26473719 ctccattcctaatcgatgtggg--ataatcactcacagttgaaacccaac-agttgaaat 26473775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 1868095 - 1868051
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||    
T  1868095 ttcctccattcttagtcgatgtgggacataatcactcacacttga 1868051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 47681208 - 47681161
Alignment:
Q  9 aacggttcctccattcctaatcgatgtgggatataatcactcacactt 56  Q
    |||| |||||||||| |||||||||| |||| ||||||||||||||||    
T  47681208 aacgtttcctccatttctaatcgatgcgggacataatcactcacactt 47681161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 47680665 - 47680623
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacactt 56  Q
    ||||||||||  |||||||||||||| ||||||||||||||||    
T  47680665 ttcctccatttataatcgatgtgggacataatcactcacactt 47680623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 48635159 - 48635205
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttgaaa 60  Q
    ||||||||||  ||||| |||||||| ||||||||||||||||||||    
T  48635159 ttcctccatttataatcaatgtgggacataatcactcacacttgaaa 48635205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 51681582 - 51681532
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttgaaaccca 64  Q
    |||||| ||||||| || |||||||| ||||||||| ||||||||||||||    
T  51681582 ttcctcaattcctagtcaatgtgggacataatcacttacacttgaaaccca 51681532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 41340322 - 41340279
Alignment:
Q  15 tcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  41340322 tcctccattcctagtcgatgtgggacataatcactcacacttga 41340279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 3294930 - 3294974
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||    
T  3294930 ttcctccattcctagtcgatatgggacataatcactcacacttga 3294974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 5963727 - 5963683
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||    
T  5963727 ttcctccattcctagtcgatgtgggacataatcacacacacttga 5963683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 14168978 - 14168934
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||||||| ||||||||||| |||||| || ||||||||    
T  14168978 ttcctccattcctagtcgatgtgggacataatcccttacacttga 14168934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 34103598 - 34103554
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||| ||| ||||||||| | ||||||||||||||||||    
T  34103598 ttcctccatttctattcgatgtggaacataatcactcacacttga 34103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 41341498 - 41341456
Alignment:
Q  15 tcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||||||||||| || |||||||| ||||||||||||||||||    
T  41341498 tcctccattcctagtc-atgtgggacataatcactcacacttga 41341456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 43834523 - 43834485
Alignment:
Q  30 cgatgtgggatataatcactcacacttgaaacccaacaa 68  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  43834523 cgatgtgagatataatcactcacacttgaaacccaacaa 43834485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 5821770 - 5821717
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaaca 67  Q
    |||||||||||   ||||||||| || |||||||||||||||||||||||||||    
T  5821770 ttcctccattctcgatcgatgtgagacataatcactcacacttgaaacccaaca 5821717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 15327905 - 15327856
Alignment:
Q  9 aacggttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||| |||||||||||||| |||||||| || ||||||||||||||||||    
T  15327905 aacgtttcctccattcctagtcgatgtgagacataatcactcacacttga 15327856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 26231767 - 26231820
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaaca 67  Q
    |||||| ||||||||||||||||||| ||||| ||| |||||| ||||||||||    
T  26231767 ttcctcaattcctaatcgatgtgggacataattacttacacttaaaacccaaca 26231820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 4392018 - 4392068
Alignment:
Q  8 caacggttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||| |||||||||||||| ||||||||||| ||||||||| ||| ||||    
T  4392018 caacgtttcctccattcctactcgatgtgggacataatcacttacagttga 4392068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 27686638 - 27686680
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacactt 56  Q
    |||||||||||||| ||||||||| | ||||||||||||||||    
T  27686638 ttcctccattcctagtcgatgtggaacataatcactcacactt 27686680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 31973444 - 31973493
Alignment:
Q  9 aacggttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||||||||||||| ||| ||| |||| || ||||||||||||||||||    
T  31973444 aacggttcctccatttctagtcggtgtgagacataatcactcacacttga 31973493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 4392306 - 4392350
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||||||||| || |||||||| || ||||||||||||||||||    
T  4392306 ttcctccattcatagtcgatgtgagacataatcactcacacttga 4392350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 25294901 - 25294945
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    ||||||||||||||  | |||||||| ||||||||||||||||||    
T  25294901 ttcctccattcctagccaatgtgggacataatcactcacacttga 25294945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 34665923 - 34665963
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacac 54  Q
    |||||| ||| ||| ||||||||||||||||||||||||||    
T  34665923 ttcctcaatttctagtcgatgtgggatataatcactcacac 34665963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 19548188 - 19548134
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttgaaacccaacaa 68  Q
    |||||| ||| ||| ||||||||||| |||| ||||||| |||||||||||||||    
T  19548188 ttcctctatttctagtcgatgtgggacataaccactcacgcttgaaacccaacaa 19548134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 13792608 - 13792652
Alignment:
Q  14 ttcctccattcctaatcgatgtgggatataatcactcacacttga 58  Q
    |||||||||| ||| | ||||||||| ||||||||||||||||||    
T  13792608 ttcctccatttctagttgatgtgggacataatcactcacacttga 13792652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University