View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791-INSERTION-19 (Length: 145)
Name: NF0791-INSERTION-19
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791-INSERTION-19 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 1e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 17894536 - 17894670
Alignment:
| Q |
7 |
ataaaggacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcacaaaatttagtttgtattc |
106 |
Q |
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| T |
17894536 |
ataaatgacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcacaaaatttagtttgtattc |
17894635 |
T |
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| Q |
107 |
atgtttcgttgtccaataagctccaggatttgtag |
141 |
Q |
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| T |
17894636 |
atgtttccttgtccaataagctccaagatttgtag |
17894670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 6444680 - 6444814
Alignment:
| Q |
7 |
ataaaggacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcacaaaatttagtttgtattc |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6444680 |
ataaatgacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcacaaaatttagtttgtattc |
6444779 |
T |
|
| Q |
107 |
atgtttcgttgtccaataagctccaggatttgtag |
141 |
Q |
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| T |
6444780 |
atgtttccttgtccaataagctccaagatttgtag |
6444814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 37188035 - 37187901
Alignment:
| Q |
7 |
ataaaggacataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcacaaaatttagtttgtattc |
106 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37188035 |
ataaatgacataataagaaacatcaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatgtcacaaaatttagtttgtattc |
37187936 |
T |
|
| Q |
107 |
atgtttcgttgtccaataagctccaggatttgtag |
141 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
37187935 |
atgtttcgttgtccaataagctccaagatttgtag |
37187901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 9e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 4750051 - 4749924
Alignment:
| Q |
14 |
acataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccactccgcataatttcacaaaatttagtttgtattcatgtttc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4750051 |
acataataagaaacaccaaatcaatatttgaattgaaatatctaaaggtacactatccattccgcataatttcacaaaatttagtttgtattcatgtttc |
4749952 |
T |
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| Q |
114 |
gttgtccaataagctccaggatttgtag |
141 |
Q |
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| T |
4749951 |
gttgtccaataagctccaagatttgtag |
4749924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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