View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791-INSERTION-2 (Length: 543)

Name: NF0791-INSERTION-2
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791-INSERTION-2
NF0791-INSERTION-2
[»] chr6 (34 HSPs)
chr6 (7-414)||(2954322-2954735)
chr6 (417-524)||(5582407-5582514)
chr6 (105-196)||(2978451-2978542)
chr6 (17-80)||(2996867-2996930)
chr6 (417-524)||(9047004-9047111)
chr6 (105-185)||(2937676-2937756)
chr6 (417-504)||(34188721-34188809)
chr6 (17-76)||(2935124-2935183)
chr6 (105-196)||(2974212-2974303)
chr6 (128-196)||(2929514-2929582)
chr6 (129-193)||(2952141-2952205)
chr6 (417-524)||(10397869-10397977)
chr6 (105-196)||(2934804-2934895)
chr6 (21-80)||(2937981-2938040)
chr6 (443-524)||(2960642-2960723)
chr6 (129-193)||(2927368-2927432)
chr6 (105-193)||(2964717-2964805)
chr6 (105-196)||(2983068-2983162)
chr6 (417-524)||(2836289-2836396)
chr6 (17-76)||(2929834-2929893)
chr6 (21-80)||(2974528-2974587)
chr6 (17-80)||(3003278-3003341)
chr6 (415-485)||(339266-339335)
chr6 (105-196)||(2658767-2658864)
chr6 (135-193)||(3003596-3003654)
chr6 (417-497)||(9695975-9696055)
chr6 (432-504)||(28614480-28614552)
chr6 (17-80)||(2927681-2927744)
chr6 (420-485)||(14939026-14939092)
chr6 (420-524)||(34249090-34249195)
chr6 (432-496)||(23663864-23663928)
chr6 (417-498)||(1781125-1781207)
chr6 (39-80)||(2965030-2965071)
chr6 (344-405)||(8349737-8349798)
[»] chr5 (29 HSPs)
chr5 (417-524)||(13694766-13694873)
chr5 (418-524)||(13694982-13695088)
chr5 (417-520)||(39605908-39606011)
chr5 (417-524)||(16567721-16567829)
chr5 (417-504)||(1672584-1672671)
chr5 (417-524)||(15503847-15503954)
chr5 (417-524)||(43228720-43228827)
chr5 (415-521)||(42989461-42989569)
chr5 (417-504)||(37779595-37779682)
chr5 (442-524)||(16667571-16667653)
chr5 (420-524)||(32953745-32953850)
chr5 (417-498)||(37607386-37607467)
chr5 (420-524)||(9738306-9738410)
chr5 (417-524)||(21068927-21069035)
chr5 (417-524)||(34443896-34444004)
chr5 (416-496)||(35468820-35468900)
chr5 (416-466)||(767230-767280)
chr5 (416-485)||(13942899-13942969)
chr5 (420-497)||(36234675-36234752)
chr5 (432-524)||(2476350-2476442)
chr5 (443-524)||(7162161-7162242)
chr5 (416-524)||(30248894-30249003)
chr5 (432-524)||(34846301-34846393)
chr5 (417-503)||(15675232-15675318)
chr5 (453-524)||(17192747-17192818)
chr5 (465-519)||(7159672-7159726)
chr5 (432-498)||(33006841-33006907)
chr5 (414-503)||(8214711-8214800)
chr5 (424-524)||(12267487-12267587)
[»] scaffold0024 (2 HSPs)
scaffold0024 (105-205)||(44713-44813)
scaffold0024 (105-200)||(35024-35119)
[»] chr2 (17 HSPs)
chr2 (405-524)||(34756598-34756718)
chr2 (432-524)||(42152604-42152696)
chr2 (417-524)||(4570556-4570663)
chr2 (432-523)||(304200-304291)
chr2 (415-524)||(13203696-13203806)
chr2 (452-524)||(25562890-25562962)
chr2 (417-486)||(33909456-33909525)
chr2 (417-524)||(41114946-41115054)
chr2 (449-524)||(16221078-16221153)
chr2 (447-524)||(15429140-15429217)
chr2 (463-524)||(28816669-28816730)
chr2 (404-481)||(41010394-41010471)
chr2 (421-521)||(22572780-22572880)
chr2 (432-504)||(2475769-2475841)
chr2 (434-498)||(27701998-27702062)
chr2 (211-253)||(1270536-1270578)
chr2 (417-466)||(15651169-15651218)
[»] chr7 (18 HSPs)
chr7 (417-504)||(41759717-41759804)
chr7 (105-196)||(3339230-3339321)
chr7 (417-524)||(5991494-5991602)
chr7 (431-524)||(815062-815155)
chr7 (417-523)||(30852275-30852380)
chr7 (421-498)||(19377319-19377395)
chr7 (420-524)||(22206763-22206868)
chr7 (420-524)||(22227871-22227976)
chr7 (417-504)||(28694148-28694236)
chr7 (417-524)||(35300517-35300625)
chr7 (439-498)||(21932881-21932940)
chr7 (467-524)||(3012279-3012336)
chr7 (17-80)||(3339546-3339609)
chr7 (417-524)||(41862396-41862503)
chr7 (417-494)||(38129111-38129186)
chr7 (417-520)||(25688271-25688375)
chr7 (340-396)||(32425271-32425327)
chr7 (472-524)||(7873297-7873349)
[»] chr1 (27 HSPs)
chr1 (417-524)||(6802177-6802284)
chr1 (417-524)||(11647071-11647178)
chr1 (416-529)||(4773936-4774050)
chr1 (418-524)||(44238936-44239042)
chr1 (417-524)||(14727248-14727356)
chr1 (417-520)||(49898345-49898449)
chr1 (421-524)||(33169359-33169462)
chr1 (416-524)||(25007393-25007502)
chr1 (424-492)||(41751909-41751977)
chr1 (416-524)||(24645983-24646091)
chr1 (461-521)||(16640366-16640426)
chr1 (417-524)||(27460626-27460734)
chr1 (417-524)||(27584090-27584198)
chr1 (446-529)||(4642142-4642225)
chr1 (417-520)||(8239210-8239313)
chr1 (432-486)||(4163388-4163442)
chr1 (455-524)||(25011613-25011682)
chr1 (416-524)||(37154067-37154176)
chr1 (420-524)||(33469018-33469121)
chr1 (417-524)||(44305342-44305450)
chr1 (453-524)||(9527012-9527083)
chr1 (417-508)||(37574864-37574955)
chr1 (416-522)||(6331605-6331710)
chr1 (345-390)||(13809949-13809994)
chr1 (417-481)||(24745334-24745398)
chr1 (344-394)||(7028239-7028289)
chr1 (345-394)||(24915125-24915174)
[»] chr8 (15 HSPs)
chr8 (415-524)||(21138135-21138245)
chr8 (418-524)||(34282974-34283081)
chr8 (432-522)||(12478081-12478171)
chr8 (417-529)||(38214689-38214802)
chr8 (417-529)||(27321922-27322034)
chr8 (432-524)||(8968276-8968368)
chr8 (415-524)||(24964961-24965071)
chr8 (432-485)||(39431790-39431843)
chr8 (416-523)||(28927989-28928096)
chr8 (421-497)||(3384135-3384211)
chr8 (195-253)||(34336235-34336293)
chr8 (268-331)||(36336659-36336722)
chr8 (432-490)||(376381-376439)
chr8 (417-498)||(36406604-36406686)
chr8 (419-451)||(13243025-13243057)
[»] chr4 (28 HSPs)
chr4 (417-524)||(50383819-50383927)
chr4 (417-520)||(15034554-15034658)
chr4 (417-520)||(32828146-32828250)
chr4 (418-520)||(1585642-1585744)
chr4 (417-503)||(2576091-2576177)
chr4 (416-524)||(6017046-6017155)
chr4 (416-524)||(40969154-40969263)
chr4 (418-524)||(41972514-41972622)
chr4 (417-504)||(25237495-25237583)
chr4 (417-504)||(9003488-9003575)
chr4 (417-524)||(31364067-31364174)
chr4 (417-524)||(32005846-32005953)
chr4 (415-478)||(52373668-52373731)
chr4 (415-504)||(9809723-9809812)
chr4 (415-524)||(31929120-31929229)
chr4 (418-503)||(49744972-49745057)
chr4 (417-496)||(8901735-8901814)
chr4 (417-490)||(36947447-36947520)
chr4 (432-524)||(4552132-4552224)
chr4 (417-504)||(9694019-9694106)
chr4 (417-524)||(10715585-10715694)
chr4 (417-524)||(10929355-10929464)
chr4 (417-524)||(2017514-2017622)
chr4 (432-524)||(11827103-11827195)
chr4 (415-524)||(4728475-4728585)
chr4 (453-524)||(46645559-46645630)
chr4 (420-524)||(14044279-14044384)
chr4 (347-391)||(3155553-3155597)
[»] scaffold0108 (1 HSPs)
scaffold0108 (417-498)||(21101-21183)
[»] chr3 (24 HSPs)
chr3 (416-524)||(41218460-41218569)
chr3 (417-529)||(9600287-9600399)
chr3 (417-524)||(37516567-37516674)
chr3 (417-524)||(53651835-53651942)
chr3 (420-521)||(33179204-33179306)
chr3 (415-524)||(41199967-41200077)
chr3 (417-529)||(53987800-53987913)
chr3 (417-524)||(26278289-26278395)
chr3 (423-524)||(41358704-41358805)
chr3 (415-515)||(38239388-38239488)
chr3 (105-196)||(49613641-49613732)
chr3 (417-524)||(44047520-44047628)
chr3 (417-524)||(25391901-25392009)
chr3 (417-524)||(47511721-47511826)
chr3 (102-185)||(49618640-49618723)
chr3 (451-524)||(7500915-7500988)
chr3 (417-498)||(54845987-54846068)
chr3 (418-518)||(43447476-43447571)
chr3 (417-520)||(44625634-44625738)
chr3 (417-524)||(12909763-12909864)
chr3 (419-529)||(14461007-14461114)
chr3 (345-391)||(30956700-30956746)
chr3 (345-391)||(30972512-30972558)
chr3 (422-520)||(43700235-43700333)
[»] scaffold0638 (1 HSPs)
scaffold0638 (432-521)||(4045-4134)
[»] scaffold0075 (2 HSPs)
scaffold0075 (419-524)||(6843-6949)
scaffold0075 (416-524)||(11455-11562)
[»] scaffold0021 (1 HSPs)
scaffold0021 (417-485)||(109427-109494)
[»] scaffold0263 (1 HSPs)
scaffold0263 (191-253)||(5799-5861)


Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 414
Target Start/End: Complemental strand, 2954735 - 2954322
Alignment:
Q  7 agtgataacacctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaagaccattagggtaatgtcactactccaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2954735 agtgataacacctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaagaccattagggtaatgacactactccaa 2954636  T
Q  107 acaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttaggctttgtttg 206  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2954635 acaaaatatcggtctgatcatcaactcttaattgaggaattccaagaactcgttgtgaaaacctcaagtcaagtaaacactcacttttaggctttgtttg 2954536  T
Q  207 gagatttggagggaaggagaatggaagactt------tgagggatggaaaatagagaannnnnnnnnaaacttaggtagtaaatatctccctcaaattta 300  Q
    |||||||||||||||||||||||||||||||      |||||||||||||||| ||||         |||||||||| ||||||||||||||||||||||    
T  2954535 gagatttggagggaaggagaatggaagactttgagtttgagggatggaaaataaagaatttttttttaaacttaggtggtaaatatctccctcaaattta 2954436  T
Q  301 aattttatgtgcaaatattcccttcaaattttaaacttctaagttatacaaaaactatttaactatattttatctttagctaaagaaatagtttttatac 400  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2954435 aaatttatgtgcaaatattcccttcaaattttaaacttctaagttatacaaaaactatttaactatattttatctttagctaaggaaatagtttttatac 2954336  T
Q  401 aaacaatcgtcatg 414  Q
    || |||| ||||||    
T  2954335 aagcaattgtcatg 2954322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 5582407 - 5582514
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||||  || | ||||| ||||||||| |||||||    
T  5582407 caggggcggagccacccccagctagcctgggcactagcccaggctcaacttctactttctttgtagcaagcacagctattactagaacctctcgcttttc 5582506  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  5582507 ctgcggat 5582514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 2978542 - 2978451
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 196  Q
    ||||||||||||||||  ||| ||||||||||||||||||||| |||||||||||   ||||||||||| ||||||||||||||||||||||    
T  2978542 aaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 2996867 - 2996930
Alignment:
Q  17 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaaga 80  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||    
T  2996867 cctgagagtagccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaaga 2996930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 9047111 - 9047004
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||    | ||||  |||||||||||||||||||||| ||||||||||||||| ||||  | | |||||||    
T  9047111 caggggcggagccacccccagctagcctgggctagtgtccagactcagcttcaactttctttgtagtaagtccaaccattactagaatttttagcttttc 9047012  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  9047011 ctgcggat 9047004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 2937756 - 2937676
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaaca 185  Q
    ||||||||||||||||  ||| |||||| |||||||||||||| |||||||||||  |||||| |||||||||||||||||    
T  2937756 aaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctgaaaatctcaagtcaagtaaaca 2937676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 417 - 504
Target Start/End: Original strand, 34188721 - 34188809
Alignment:
Q  417 caggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    ||||||||||| || | ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||| ||||||| |||||    
T  34188721 caggggcggagtcacctcccagctagcctgggcactagccgaggctcagctccaactttctttgtagcaagcccagccattactagaac 34188809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 2935183 - 2935124
Alignment:
Q  17 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgca 76  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  2935183 cctgagagtagccttcaacttatgccaaggattcttacaaaaagcatttaagtctttgca 2935124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 2974303 - 2974212
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 196  Q
    ||||||||||||||||  ||| | |||| |||||||||||||| |||||||||||   ||||||||||||||| ||||||| ||||||||||    
T  2974303 aaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcatgtaaacattcacttttag 2974212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 2929582 - 2929514
Alignment:
Q  128 caactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 196  Q
    ||||| |||||||||||||| |||||||||||  ||||||||| |||||||||||||||| ||||||||    
T  2929582 caactgttaattgaggaatttcaagaactcctcctgaaaaccttaagtcaagtaaacacttacttttag 2929514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 2952205 - 2952141
Alignment:
Q  129 aactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttt 193  Q
    |||| |||||||||||||| ||||||||||||  ||||||||||||||||||||||||| |||||    
T  2952205 aacttttaattgaggaatttcaagaactccttccgaaaacctcaagtcaagtaaacacttacttt 2952141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 10397977 - 10397869
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||  ||||||||||| ||||  | | ||||||    
T  10397977 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaaacccaaccattacgagaatttttagctttt 10397878  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  10397877 cctgcggat 10397869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 2934895 - 2934804
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 196  Q
    |||| ||||||| |||  ||| |||||  |||||||||||||| |||||||||||   ||||||||||||||||||||||||| ||||||||    
T  2934895 aaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttttag 2934804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 2938040 - 2937981
Alignment:
Q  21 agagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaaga 80  Q
    |||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||    
T  2938040 agagtagccttcaacttatgccaaggattactgcagaaagcatttaattctttgcaaaga 2937981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 2960642 - 2960723
Alignment:
Q  443 ctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||| ||||||||||| |||||| ||| ||||||||||||||||||| ||| ||| ||||| | | |||||||||||||||    
T  2960642 ctgggtactagcccaggctcagctccaattttctttgtagcaagtccagccaatactagaacttttagcttttcctgcggat 2960723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 2927432 - 2927368
Alignment:
Q  129 aactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttt 193  Q
    |||| |||||||||||||| |||||||||||   ||||||||||||||||||||||||| |||||    
T  2927432 aacttttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttt 2927368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 2964805 - 2964717
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttt 193  Q
    ||||| ||||||||||  ||| | | || |||||||||||||| |||||||||||   ||||||||||||||||||||||||| |||||    
T  2964805 aaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttt 2964717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 2983162 - 2983068
Alignment:
Q  105 aaacaaaatttcggtct---gatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 196  Q
    ||||||||||||||||    |||||| |||| |||||||||||||| |||||||||||   |||||||||||||||  |||||||| ||||||||    
T  2983162 aaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcccgaaaacctcaagtcatataaacacttacttttag 2983068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 2836396 - 2836289
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| ||||||||| |  |||||||||  |||| | |||| ||||||||||||||||||  ||||||||| | ||||| | | ||||||     
T  2836396 caggggcggagccacccccagctaactcgggcactagttcaggtttagctccaactttctttgtagcaaacccaaccattcctagaacttttagcttttt 2836297  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  2836296 ctgcggat 2836289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 2929893 - 2929834
Alignment:
Q  17 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgca 76  Q
    ||||||||||||||||||| || |||||||||||  ||||||||||||||| ||||||||    
T  2929893 cctgagagtagccttcaacctatgccaaggattctaacaaaaagcatttaagtctttgca 2929834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 2974587 - 2974528
Alignment:
Q  21 agagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaaga 80  Q
    |||| |||||||||| || ||||||||||||||||| ||||||| |||||||||||||||    
T  2974587 agagcagccttcaacctatgccaaggattcctacaataagcattcaattctttgcaaaga 2974528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 3003278 - 3003341
Alignment:
Q  17 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaaga 80  Q
    |||||||||||||||||||||| |||| |||||| ||||| |||||||||| ||||||| ||||    
T  3003278 cctgagagtagccttcaacttatgccatggattcttacaataagcatttaagtctttgccaaga 3003341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 485
Target Start/End: Original strand, 339266 - 339335
Alignment:
Q  415 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 485  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||  ||||||  |||||||||||||||||    
T  339266 atcaagggcggagcca-ccccagctagcctgggcattagcccagattcagctctaactttctttgtagcaa 339335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 2658767 - 2658864
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactcct------tgtgaaaacctcaagtcaagtaaacactcacttttag 196  Q
    |||||||||||| |||  ||| |||||  |||||||||||||| |||||||||||      | |||||||||||||||||||||||||| ||||||||    
T  2658767 aaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgattttgaaaacctcaagtcaagtaaacacttacttttag 2658864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 3003596 - 3003654
Alignment:
Q  135 taattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttt 193  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||||||||| |||||    
T  3003596 taattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttt 3003654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 497
Target Start/End: Original strand, 9695975 - 9696055
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 497  Q
    ||||||||||| || |||||||||||||||||    ||||||| || ||| ||||||||||||||||||| |||| |||||    
T  9695975 caggggcggagtcacccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaatcatta 9696055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 28614552 - 28614480
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    ||||||||||| |||||||||||||||| |||||| ||| | ||||||||||||| | | ||||||| |||||    
T  28614552 ccccagctagcgtgggcactagcccaggctcagctccaattatctttgtagcaagcctagccattactagaac 28614480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 2927744 - 2927681
Alignment:
Q  17 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaaga 80  Q
    |||||||||||||||||||||| | |  |||||| ||||| |||||||||| ||||||||||||    
T  2927744 cctgagagtagccttcaacttatgtcgtggattcttacaataagcatttaagtctttgcaaaga 2927681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 485
Target Start/End: Complemental strand, 14939092 - 14939026
Alignment:
Q  420 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 485  Q
    ||||||||||| |||| ||||||||||| ||||||| |||| |||||| ||| ||||||||||||||    
T  14939092 gggcggagccaccccccagctagcctggacactagctcaggctcagctccaattttctttgtagcaa 14939026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 524
Target Start/End: Complemental strand, 34249195 - 34249090
Alignment:
Q  420 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 518  Q
    ||||||||||| |||| ||||||| |||||    ||||||  ||| || ||||||||||||||||||| ||||||||||| ||||  | | |||||||||    
T  34249195 gggcggagccaccccccagctagcttgggctagtgcccagactcaactccaactttctttgtagcaagcccaaccattactagaatttttagcttttcct 34249096  T
Q  519 gcggat 524  Q
    ||||||    
T  34249095 gcggat 34249090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 496
Target Start/End: Complemental strand, 23663928 - 23663864
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 496  Q
    |||||||||||||||||    ||||||| || ||| ||||||||||||||||||| |||||||||    
T  23663928 ccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaccatt 23663864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 498
Target Start/End: Complemental strand, 1781207 - 1781125
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 498  Q
    |||||||||||||| |||| |||||| ||||||    ||||||| || ||| ||||||||||||||||||  |||||||||||    
T  1781207 caggggcggagccaccccccagctagtctgggctagtgcccaggttcggctccaactttctttgtagcaaacccaaccattac 1781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 2965071 - 2965030
Alignment:
Q  39 cgccaaggattcctacaaaaagcatttaattctttgcaaaga 80  Q
    ||||||||||||| |||||||||||| || ||||||||||||    
T  2965071 cgccaaggattcccacaaaaagcattcaaatctttgcaaaga 2965030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 405
Target Start/End: Original strand, 8349737 - 8349798
Alignment:
Q  344 ttatacaaaaactatttaactatattttatctttagctaaagaaatagtttttatacaaaca 405  Q
    ||||| |||||| |||||||| |||||||||||| | || ||||||||||| || |||||||    
T  8349737 ttatataaaaacaatttaactttattttatcttttgttagagaaatagtttatacacaaaca 8349798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 13694766 - 13694873
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| ||||| ||| |||||||    
T  13694766 caggggcggagccacccccagctagcctgggcactagcccaggctcaacttcaactttctttgtagcaagcccatccattactagaacttctcgcttttc 13694865  T
Q  517 ctgcggat 524  Q
    ||| ||||    
T  13694866 ctgtggat 13694873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 418 - 524
Target Start/End: Original strand, 13694982 - 13695088
Alignment:
Q  418 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 517  Q
    ||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||||| ||||| ||| ||||||||    
T  13694982 aggggcggagccacccctagctagcctgggcactagctcaggctcagcttcaactttctttgtagcaagttcatccattactagaacttctcgcttttcc 13695081  T
Q  518 tgcggat 524  Q
    || ||||    
T  13695082 tgtggat 13695088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 520
Target Start/End: Complemental strand, 39606011 - 39605908
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||| ||||||||||||  |||||||| |||||||||||| |||||||| ||||||  ||||||||||||||||     
T  39606011 caggggcggagccacccccagctagcctgagcactagcccagactcagcttctactttctttgtaacaagtccatccattattagaacctcttgcttttt 39605912  T
Q  517 ctgc 520  Q
    ||||    
T  39605911 ctgc 39605908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 16567721 - 16567829
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||| ||||| | | ||||||    
T  16567721 caggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaagtccagccattactagaacttttagctttt 16567820  T
Q  516 cctgcggat 524  Q
    | |||||||    
T  16567821 cttgcggat 16567829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 417 - 504
Target Start/End: Complemental strand, 1672671 - 1672584
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||  ||||||||||| |||||    
T  1672671 caggggcggagccacccccagctagcctgggcactagctcaggctcagctccaattttctttgtagcaatcccaaccattactagaac 1672584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 15503847 - 15503954
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| ||| |||||| ||||||||||||||||| ||| |||||| ||||||||||||||| | ||||||||| ||||  | | |||||||    
T  15503847 caggggcggagccaccccaagctagtctgggcactagcccaggctcaccttcaaatttctttgtagcaagcctaaccattactagaatttttagcttttc 15503946  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  15503947 ctgcggat 15503954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 43228827 - 43228720
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| || ||| ||||||||||||||| ||| ||||||| ||||| | | |||||||    
T  43228827 caggggcggagccacccccagctagcctgggcactagccaaggctcaactccaattttctttgtagcaagcccagccattactagaacttttagcttttc 43228728  T
Q  517 ctgcggat 524  Q
    || |||||    
T  43228727 ctacggat 43228720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 415 - 521
Target Start/End: Original strand, 42989461 - 42989569
Alignment:
Q  415 atcaggggcggagccatcccc-agctagcctggg-cactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgct 512  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||  ||||| ||| ||||||| ||||| ||| |||    
T  42989461 atcaggggcggagccaccccccagctagcctggggcactagcccaggatcagcttctactttctttgaggcaagcccagccattactagaacttctcgct 42989560  T
Q  513 tttcctgcg 521  Q
    ||| |||||    
T  42989561 ttttctgcg 42989569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 417 - 504
Target Start/End: Original strand, 37779595 - 37779682
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    |||||||||||||| |||||||||||||||||||||| ||||| ||| || ||| |||||||||||||||| || ||||||| |||||    
T  37779595 caggggcggagccacccccagctagcctgggcactagtccaggctcaactccaattttctttgtagcaagttcagccattactagaac 37779682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 442 - 524
Target Start/End: Complemental strand, 16667653 - 16667571
Alignment:
Q  442 cctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||| ||||||| ||||| | | |||||||||||||||    
T  16667653 cctgggcactagcccagactcagctccaactttctttgtagcaagtccagccattactagaacttttagcttttcctgcggat 16667571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 420 - 524
Target Start/End: Complemental strand, 32953850 - 32953745
Alignment:
Q  420 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 518  Q
    ||||||||||| |||| |||||||||||||||||||| ||| |||||| ||| ||||||||||||||| ||| ||||||| ||||| | | |||||||||    
T  32953850 gggcggagccaccccccagctagcctgggcactagccgaggctcagctccaattttctttgtagcaagcccagccattactagaacttttagcttttcct 32953751  T
Q  519 gcggat 524  Q
     |||||    
T  32953750 acggat 32953745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 37607386 - 37607467
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 498  Q
    |||||||||||||| |||||||||||||||||||||| ||||| ||| || ||| |||||||||||||||| || |||||||    
T  37607386 caggggcggagccacccccagctagcctgggcactagtccaggctcaactccaattttctttgtagcaagttcagccattac 37607467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 420 - 524
Target Start/End: Original strand, 9738306 - 9738410
Alignment:
Q  420 gggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctg 519  Q
    ||||||||||| ||||||||||  || |||||||||| |  |||||||| |||||||||| |||||| ||||||||||| ||||| ||| || |||||||    
T  9738306 gggcggagccacccccagctagtttgtgcactagccctgactcagcttctactttctttgaagcaagcccaaccattactagaacttctcgcatttcctg 9738405  T
Q  520 cggat 524  Q
    |||||    
T  9738406 cggat 9738410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 21068927 - 21069035
Alignment:
Q  417 caggggcggagccat-ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    ||||||||||||||  ||||||||||||||||||||||| |||| ||| ||  |||||||||||||| ||| ||||||||||| ||||  | | || |||    
T  21068927 caggggcggagccacaccccagctagcctgggcactagctcaggctcaactctaactttctttgtagtaagcccaaccattactagaatttttagccttt 21069026  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  21069027 cctgcggat 21069035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 34443896 - 34444004
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | ||||||    
T  34443896 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttgtagctttt 34443995  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  34443996 cctgcggat 34444004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 35468820 - 35468900
Alignment:
Q  416 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 496  Q
    ||||||||||||||| |||||||||||||||||    ||||||| || ||| ||||||||||||||||||| |||||||||    
T  35468820 tcaggggcggagccacccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaccatt 35468900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 767230 - 767280
Alignment:
Q  416 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagct 466  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  767230 tcaggggcggagccacccccagctagcctgggcactagcccaggctcagct 767280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 13942969 - 13942899
Alignment:
Q  416 tcaggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 485  Q
    ||||||||||||||| | |||| |||||||||||||||||||||| |||| | ||||||||||||||||||    
T  13942969 tcaggggcggagccacctcccaactagcctgggcactagcccaggctcaggtccaactttctttgtagcaa 13942899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 497
Target Start/End: Complemental strand, 36234752 - 36234675
Alignment:
Q  420 gggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 497  Q
    ||||||||||| |||||| |||||||| |||||||||||  |||||| ||| ||||||||||||||| ||| ||||||    
T  36234752 gggcggagccacccccagttagcctggacactagcccagactcagctccaattttctttgtagcaagcccagccatta 36234675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 524
Target Start/End: Original strand, 2476350 - 2476442
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||||||||||||||    ||||||| |||||| ||| |||||||||||||||||| |||||||| ||||  | | |||||||||||||||    
T  2476350 ccccagctagcctgggctagtgcccaggctcagctccaattttctttgtagcaagtcctaccattactagaatttttagcttttcctgcggat 2476442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 524
Target Start/End: Complemental strand, 7162242 - 7162161
Alignment:
Q  443 ctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||| ||| ||||||| | ||  | | |||||||||||||||    
T  7162242 ctgggcactagcccaggctcagctccaattttctttgtagcaagcccagccattactaaaaattttagcttttcctgcggat 7162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 524
Target Start/End: Original strand, 30248894 - 30249003
Alignment:
Q  416 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    ||||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| ||||| ||||| ||||  | | |||||    
T  30248894 tcaggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaactattactagaatttttagcttt 30248993  T
Q  515 tcctgcggat 524  Q
    | ||||||||    
T  30248994 ttctgcggat 30249003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 524
Target Start/End: Original strand, 34846301 - 34846393
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||||||||||||||    ||||||| || ||| ||||||||||||||||||||| ||||||||| ||||  | | |||| ||||||||||    
T  34846301 ccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagtcaaaccattactagaatttttagcttatcctgcggat 34846393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 15675232 - 15675318
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 503  Q
    |||||||||||||| |||||||||||||||||    ||||||| || |||  |||||||||||| ||||  ||||||||||| ||||    
T  15675232 caggggcggagccacccccagctagcctgggctagtgcccaggctcggctctaactttctttgttgcaaacccaaccattactagaa 15675318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 524
Target Start/End: Complemental strand, 17192818 - 17192747
Alignment:
Q  453 gcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||||| |||||| |||||||||||||||||||  || ||||||| ||||| | | ||| |||||||||||    
T  17192818 gcccaggctcagctccaactttctttgtagcaagctcagccattactagaacttttagctcttcctgcggat 17192747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 519
Target Start/End: Complemental strand, 7159726 - 7159672
Alignment:
Q  465 cttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctg 519  Q
    |||| |||||||||||||||||  || ||||||| ||||||||| ||||||||||    
T  7159726 cttctactttctttgtagcaagctcagccattactagaacctctcgcttttcctg 7159672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 498
Target Start/End: Original strand, 33006841 - 33006907
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 498  Q
    |||||||||||||||||    ||||||| || ||| ||||||||||||||||||  |||||||||||    
T  33006841 ccccagctagcctgggctaatgcccaggctcggctccaactttctttgtagcaaacccaaccattac 33006907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 503
Target Start/End: Complemental strand, 8214800 - 8214711
Alignment:
Q  414 gatcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 503  Q
    |||||| |||||| ||| | |||||||||||| ||||||| ||||  | |||| ||||||| |||||| |||||| | ||||||| ||||    
T  8214800 gatcagaggcggaaccacctccagctagcctgagcactagtccagacttagctccaactttttttgtaacaagtctagccattactagaa 8214711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 524
Target Start/End: Complemental strand, 12267587 - 12267487
Alignment:
Q  424 ggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcgga 523  Q
    ||||||| ||||| ||||| |||||||||  | ||| | |||| ||||||||||||||||||| | | | ||||| ||||| | | |||||||||| |||    
T  12267587 ggagccacccccaactagcttgggcactaatctaggcttagctccaactttctttgtagcaagcctagcaattactagaacttttagcttttcctgtgga 12267488  T
Q  524 t 524  Q
    |    
T  12267487 t 12267487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 44713 - 44813
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttaggctttgtt 204  Q
    |||||||||||| |  ||||||||| ||||||||||||||||| ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  44713 aaacaaaatttcaggttgatcatcagctcttaattgaggaatttcaagaactctttctgaaaacctcaaatcaagtaaacactcacttttaggctttgtt 44812  T
Q  205 t 205  Q
    |    
T  44813 t 44813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 35024 - 35119
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttaggctt 200  Q
    ||||||||||||||||  ||| ||||||  |||| |||||||| |||| |||||||  ||||||| ||||||||||||||||||||||||||||||    
T  35024 aaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccgaaaaccccaagtcaagtaaacactcacttttaggctt 35119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 405 - 524
Target Start/End: Original strand, 34756598 - 34756718
Alignment:
Q  405 aatcgtcatgatcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 503  Q
    |||| |||| ||||||| |||||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||  || |||| ||||    
T  34756598 aatcatcataatcagggacggagccaccccccagctagcctgggcactagcccaggctcagcttctactttctttgtagcaagtccggccgttactagaa 34756697  T
Q  504 cctcttgcttttcctgcggat 524  Q
    |||||  ||||||||||||||    
T  34756698 cctctcacttttcctgcggat 34756718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 432 - 524
Target Start/End: Complemental strand, 42152696 - 42152604
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||||||| ||||||||||| ||||| |||||||| |||||||||||||||| |||| ||||||  ||||||||| |||||||||||||||    
T  42152696 ccccagctagtctgggcactagtccaggttcagcttctactttctttgtagcaaatccagccattattagaacctctcgcttttcctgcggat 42152604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 4570663 - 4570556
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| ||||||||||| |||||||||||||||| | |||||| ||||||||||||| ||| ||| ||||||| |||| || | ||||| |    
T  4570663 caggggcggagccacccccagctagcatgggcactagcccaggctgagcttctactttctttgtagtaagcccagccattactagaaactttcgctttac 4570564  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  4570563 ctgcggat 4570556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 523
Target Start/End: Complemental strand, 304291 - 304200
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcgga 523  Q
    ||||||||||| |||||||||||||| | |||||| |||||||||||||||||||  || ||||||| ||||| | | ||||||||||||||    
T  304291 ccccagctagcttgggcactagcccaagctcagctccaactttctttgtagcaagctcagccattactagaacttttagcttttcctgcgga 304200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 13203696 - 13203806
Alignment:
Q  415 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 513  Q
    |||||||| ||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||  | | ||||    
T  13203696 atcaggggtggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagcccaaccattactagaatttttagctt 13203795  T
Q  514 ttcctgcggat 524  Q
    |||||||||||    
T  13203796 ttcctgcggat 13203806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 524
Target Start/End: Original strand, 25562890 - 25562962
Alignment:
Q  452 agcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| | | |||||||||||||||    
T  25562890 agcccaggctcagctccaactttctttgtagcaagcccaaccattactagaacttttagcttttcctgcggat 25562962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 33909525 - 33909456
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaag 486  Q
    |||||||||||||| || |||||| |||||||||||||||||  | |||| |||||||||||||||||||    
T  33909525 caggggcggagccaccctcagctaacctgggcactagcccagacttagctccaactttctttgtagcaag 33909456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 41115054 - 41114946
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    ||||||||||||||||||| |||||||||||||    ||||||| || ||| |||||||||||||||||||  |||||||||| ||||  | | | ||||    
T  41115054 caggggcggagccatcccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagctcaaccattactagaatttttagttttt 41114955  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  41114954 cctgcggat 41114946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 524
Target Start/End: Complemental strand, 16221153 - 16221078
Alignment:
Q  449 actagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||||||||| |||| ||| ||||||| |||| ||||  |||||||||| ||||| |||||||||||||||||||    
T  16221153 actagcccaggctcaggttctactttctgtgtaacaagcacaaccattactagaacttcttgcttttcctgcggat 16221078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 524
Target Start/End: Original strand, 15429140 - 15429217
Alignment:
Q  447 gcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||||| |||| |||||||| |||||||||||||||||||  | |||||| ||||||||| |||||| || |||||    
T  15429140 gcactagctcaggctcagcttctactttctttgtagcaagtctgatcattactagaacctctcgctttttcttcggat 15429217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 524
Target Start/End: Original strand, 28816669 - 28816730
Alignment:
Q  463 agcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||| |||| |||||||||||||||| ||||||  |||||||||||||||| ||||||||    
T  28816669 agcttctacttactttgtagcaagtccagccattattagaacctcttgctttttctgcggat 28816730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 41010394 - 41010471
Alignment:
Q  404 caatcgtcatgatcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgta 481  Q
    ||||| ||| |||| |||||||||||| |||||||||||||||||||||| | ||  |||||| ||||||| ||||||    
T  41010394 caatcatcaagatctggggcggagccaaccccagctagcctgggcactagtctagactcagctccaactttttttgta 41010471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 521
Target Start/End: Complemental strand, 22572880 - 22572780
Alignment:
Q  421 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgc 520  Q
    |||||||||| |||| ||||||||||||    | ||||| |||||| ||||||||||||||||||| | ||||||||| ||||  | | |||||||||||    
T  22572880 ggcggagccacccccggctagcctgggctagtgtccaggctcagctccaactttctttgtagcaagcctaaccattactagaatatttagcttttcctgc 22572781  T
Q  521 g 521  Q
    |    
T  22572780 g 22572780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 504
Target Start/End: Original strand, 2475769 - 2475841
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    ||||||||||  |||||||||| ||||  |||||| ||||||||||||||| ||| ||| ||||||| |||||    
T  2475769 ccccagctagtttgggcactagtccagactcagctccaactttctttgtaggaagcccagccattactagaac 2475841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 498
Target Start/End: Original strand, 27701998 - 27702062
Alignment:
Q  434 ccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 498  Q
    |||| ||||||||||||||||| ||| |||||| ||||||||| |||| ||| |||| |||||||    
T  27701998 ccagttagcctgggcactagcctaggctcagctccaactttctctgtaacaaatccagccattac 27702062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 1270536 - 1270578
Alignment:
Q  211 tttggagggaaggagaatggaagactttgagggatggaaaata 253  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||    
T  1270536 tttggaggggaggagaatgaaagactttgagggatagaaaata 1270578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 466
Target Start/End: Original strand, 15651169 - 15651218
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagct 466  Q
    |||||||||||||| ||||||||||||| | |||||||||| | ||||||    
T  15651169 caggggcggagccacccccagctagcctcgacactagcccatgctcagct 15651218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 504
Target Start/End: Complemental strand, 41759804 - 41759717
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||| |||||    
T  41759804 caggggcggagccacccccagctagcctgggcactagcccaggctcagctccaactttctttgtagcaagcccagccattactagaac 41759717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 3339321 - 3339230
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 196  Q
    ||||||||||||||||  ||| |||||| |||||||||||||| |||||||||||   |||||||||||| |||||||||||||||||||||    
T  3339321 aaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagccaagtaaacactcacttttag 3339230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 5991602 - 5991494
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||||||||||||| ||| || ||| ||||||||||||||| ||| ||||||| ||||| | | | ||||    
T  5991602 caggggcggagccaccccccagctagcctgggcactagcccaggctcaactccaattttctttgtagcaagcccagccattactagaacttttagttttt 5991503  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  5991502 cctgcggat 5991494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 431 - 524
Target Start/End: Complemental strand, 815155 - 815062
Alignment:
Q  431 tccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || | ||||||| ||||| | | ||||||||| |||||    
T  815155 tccccagttagcctgggcactagcccaggctcagctccaactttctttgtagcaaatctagccattactagaacttttagcttttcctacggat 815062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 523
Target Start/End: Original strand, 30852275 - 30852380
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    ||||||| |||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||  || ||||||| ||||| | |  ||||||    
T  30852275 caggggcagagcca-ccccagctagcctgggcactagcccaggctcagctccaattttctttgtagtaagctcagccattactagaacttttaacttttc 30852373  T
Q  517 ctgcgga 523  Q
    |||||||    
T  30852374 ctgcgga 30852380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 19377319 - 19377395
Alignment:
Q  421 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 498  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||| |||||||||||||| ||| |||| |||||||    
T  19377319 ggcggagcca-ccccagctagcttgggcactagcccaggctcagctccaactttctttgtaacaactccagccattac 19377395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 524
Target Start/End: Complemental strand, 22206868 - 22206763
Alignment:
Q  420 gggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 518  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||  |||||| | ||  | | |||||||||    
T  22206868 gggcggagccaccacccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaagcccaggcattactataatttttagcttttcct 22206769  T
Q  519 gcggat 524  Q
    ||||||    
T  22206768 gcggat 22206763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 524
Target Start/End: Original strand, 22227871 - 22227976
Alignment:
Q  420 gggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 518  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||  |||||| | ||  | | |||||||||    
T  22227871 gggcggagccaccacccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaagcccaggcattactataatttttagcttttcct 22227970  T
Q  519 gcggat 524  Q
    ||||||    
T  22227971 gcggat 22227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 504
Target Start/End: Complemental strand, 28694236 - 28694148
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    |||||||| |||||||||| ||||||||||| ||||| |||||| |||||| |||||||||||||||||||| |  ||||||| |||||    
T  28694236 caggggcgtagccatcccccagctagcctggacactaacccaggctcagctccaactttctttgtagcaagttccgccattactagaac 28694148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 35300625 - 35300517
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | ||||||    
T  35300625 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatgtttagctttt 35300526  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  35300525 cctgcggat 35300517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 21932940 - 21932881
Alignment:
Q  439 tagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 498  Q
    ||||||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  21932940 tagcctgggcactagcccaggctcaactccaactttctttgtagcaagcccaaccattac 21932881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 3012279 - 3012336
Alignment:
Q  467 tcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||||||||||||||||| ||||||||||| ||||| | | |||||||||||||||    
T  3012279 tcaactttctttgtagcaagcccaaccattactagaacttttagcttttcctgcggat 3012336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 3339609 - 3339546
Alignment:
Q  17 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaaga 80  Q
    ||||||||| ||||||||| || ||||||||||| |||||||| ||||||| ||||||| ||||    
T  3339609 cctgagagtggccttcaacctatgccaaggattcttacaaaaatcatttaagtctttgccaaga 3339546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 41862503 - 41862396
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    ||||||||||||||  ||||||||| |||||||||||||||   |||||| | |||||||||| ||||| | || ||||||| || | |||||| ||||     
T  41862503 caggggcggagccaaacccagctagtctgggcactagcccatactcagctcctactttctttgcagcaaattcagccattactagtatctcttgtttttt 41862404  T
Q  517 ctgcggat 524  Q
    || |||||    
T  41862403 ctacggat 41862396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 494
Target Start/End: Complemental strand, 38129186 - 38129111
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaacca 494  Q
    |||||||||||||| ||||||||||| ||||||||| | |||| ||||||  ||||||| || |||||||||||||||    
T  38129186 caggggcggagcca-ccccagctagcatgggcactaactcaggctcagctcaaactttc-ttatagcaagtccaacca 38129111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 520
Target Start/End: Complemental strand, 25688375 - 25688271
Alignment:
Q  417 caggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| | ||||| ||| ||||| ||||||||||  |||||| ||| |||||||||||||||  || ||||||| | ||| | | ||||||    
T  25688375 caggggcggagccaccacccagttagtctgggtactagcccagactcagctccaattttctttgtagcaagctcagccattactaaaacttttagctttt 25688276  T
Q  516 cctgc 520  Q
    |||||    
T  25688275 cctgc 25688271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 32425327 - 32425271
Alignment:
Q  340 taagttatacaaaaactatttaactatattttatctttagctaaagaaatagttttt 396  Q
    |||||||| ||||| | ||||||||| ||||||||||||||||  ||||||||||||    
T  32425327 taagttattcaaaatcaatttaactacattttatctttagctacggaaatagttttt 32425271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 524
Target Start/End: Complemental strand, 7873349 - 7873297
Alignment:
Q  472 tttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||||||||||||| ||||||||||| ||||| | | |||||| ||||||||    
T  7873349 tttctttgtagcaagcccaaccattactagaacttttagctttttctgcggat 7873297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 6802284 - 6802177
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||||  || ||||||| ||||| ||| |||||||    
T  6802284 caggggcagagccacccccagctagcctgggcactagcccaggctcaacttctactttctttgtagcaagctcagccattactagaacttctcgcttttc 6802185  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  6802184 ctgcggat 6802177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 11647071 - 11647178
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||| |||||| || ||  ||| |||| ||||||||||||||||| | | ||||||||||||||||| |||||||    
T  11647071 caggggcggagccacccccagctagcctgagcactatccgagactcaacttctactttctttgtagcaagccaagccattacaagaacctctcgcttttc 11647170  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  11647171 ctgcggat 11647178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 416 - 529
Target Start/End: Original strand, 4773936 - 4774050
Alignment:
Q  416 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    ||||||||||||||| |||| |||||||||||||||||||||||  ||| || ||| ||| ||||||||||| ||| ||||||| ||||| | | |||||    
T  4773936 tcaggggcggagccaccccccagctagcctgggcactagcccagactcaactccaattttttttgtagcaagcccagccattactagaacttttagcttt 4774035  T
Q  515 tcctgcggatattta 529  Q
    |||||||||||||||    
T  4774036 tcctgcggatattta 4774050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 524
Target Start/End: Complemental strand, 44239042 - 44238936
Alignment:
Q  418 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 517  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||| ||| ||||||| ||||  | | |||||||     
T  44239042 aggggcggagccacccccagctagtctgggcactagcccaggctcagctccaactttctttgtagaaagcccagccattactagaaattttagcttttct 44238943  T
Q  518 tgcggat 524  Q
    |||||||    
T  44238942 tgcggat 44238936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 14727248 - 14727356
Alignment:
Q  417 caggggcggagccatcccca-gctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| ||||| ||||||||||||    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||  | | ||||||    
T  14727248 caggggcggagccacccccaagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagtccaaccattactagaatttttagctttt 14727347  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  14727348 cctgcggat 14727356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 520
Target Start/End: Original strand, 49898345 - 49898449
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||| || ||||||| ||||  | | ||||||    
T  49898345 caggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaactttctttgtaacaagttcagccattactagaagttttagctttt 49898444  T
Q  516 cctgc 520  Q
    |||||    
T  49898445 cctgc 49898449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 524
Target Start/End: Complemental strand, 33169462 - 33169359
Alignment:
Q  421 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgc 520  Q
    |||||||||| ||| ||||||||| ||||||| |||| | |||||||| ||||| |||||| |||| ||||||||||| | ||||||| |||||||||||    
T  33169462 ggcggagccacccctagctagcctaggcactaacccaagctcagcttctactttttttgtaacaagcccaaccattactataacctctcgcttttcctgc 33169363  T
Q  521 ggat 524  Q
    ||||    
T  33169362 ggat 33169359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 416 - 524
Target Start/End: Original strand, 25007393 - 25007502
Alignment:
Q  416 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    ||||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | |||||    
T  25007393 tcaggggcggagccaccccccagctagcctgggctaatgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttt 25007492  T
Q  515 tcctgcggat 524  Q
    ||||||||||    
T  25007493 tcctgcggat 25007502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 424 - 492
Target Start/End: Original strand, 41751909 - 41751977
Alignment:
Q  424 ggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaac 492  Q
    ||||||| |||||||||||||||||||||||||||   || |||| |||||||||||||||||||||||    
T  41751909 ggagccaaccccagctagcctgggcactagcccagacgcaacttctactttctttgtagcaagtccaac 41751977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 524
Target Start/End: Original strand, 24645983 - 24646091
Alignment:
Q  416 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    ||||||||||||||| |||| ||||||| ||| ||||||| |||| ||| || |||||||||||||||||| | |||||||||| ||||| | | |||||    
T  24645983 tcaggggcggagccaccccccagctagcatggacactagctcaggctcaactccaactttctttgtagcaact-caaccattactagaacttttagcttt 24646081  T
Q  515 tcctgcggat 524  Q
    ||||| ||||    
T  24646082 tcctgtggat 24646091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 461 - 521
Target Start/End: Complemental strand, 16640426 - 16640366
Alignment:
Q  461 tcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcg 521  Q
    |||| ||| ||||||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  16640426 tcagtttctactttctttgtagcaagaccaaccattacaagaatctctcgcttttcctgcg 16640366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 27460626 - 27460734
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| ||||||| |||||    ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||  | | ||||||    
T  27460626 caggggcggagccaccccctagctagcatgggctagtgcccaggctcagctccaactttctttgtagcaagcccaaccattactagaatttttagctttt 27460725  T
Q  516 cctgcggat 524  Q
    | |||||||    
T  27460726 cttgcggat 27460734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 27584198 - 27584090
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| | ||||||||| ||||  | | ||||||    
T  27584198 caggggcggagccaccccccagctagcctgggctagcgcccaggctcggctccaactttctttgtagcaagccaaaccattactagaatttttagctttt 27584099  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  27584098 cctgcggat 27584090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 529
Target Start/End: Complemental strand, 4642225 - 4642142
Alignment:
Q  446 ggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggatattta 529  Q
    |||||||| ||||| |||||| | |||||||||||||||||| || ||||||| ||||| | | ||||||||||||||| ||||    
T  4642225 ggcactagtccaggctcagctccgactttctttgtagcaagttcagccattactagaacttttagcttttcctgcggattttta 4642142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 520
Target Start/End: Original strand, 8239210 - 8239313
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||    ||||||| |||||| ||||||||||||||| ||  || |||||||| ||||  | | |||||||    
T  8239210 caggggcggagccacccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagtaatccctaccattactagaatttttagcttttc 8239309  T
Q  517 ctgc 520  Q
    ||||    
T  8239310 ctgc 8239313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 432 - 486
Target Start/End: Original strand, 4163388 - 4163442
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaag 486  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||| |||||||    
T  4163388 ccccagctagcctgggcactagcccaggtttagctccaactttctttatagcaag 4163442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 455 - 524
Target Start/End: Complemental strand, 25011682 - 25011613
Alignment:
Q  455 ccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||| ||||  | | |||||||||||||||    
T  25011682 ccaggctcagctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggat 25011613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 524
Target Start/End: Complemental strand, 37154176 - 37154067
Alignment:
Q  416 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    ||||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||| |||  | |||||||| ||||  | | |||||    
T  37154176 tcaggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagctctaccattactagaatttttagcttt 37154077  T
Q  515 tcctgcggat 524  Q
    ||||||||||    
T  37154076 tcctgcggat 37154067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 524
Target Start/End: Complemental strand, 33469121 - 33469018
Alignment:
Q  420 gggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctg 519  Q
    ||||||||||| |||||||||||||||||    ||| ||| |||||| ||||||||||| |||||| | |||||||||| ||||  | | ||||||||||    
T  33469121 gggcggagcca-ccccagctagcctgggctagtgcctaggctcagctccaactttctttatagcaaattcaaccattactagaaattttagcttttcctg 33469023  T
Q  520 cggat 524  Q
    |||||    
T  33469022 cggat 33469018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 44305342 - 44305450
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||| ||| || || ||||| ||||  | | ||||||    
T  44305342 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagccctacaattactagaatttttagctttt 44305441  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  44305442 cctgcggat 44305450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 524
Target Start/End: Original strand, 9527012 - 9527083
Alignment:
Q  453 gcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||||  ||||| ||||||||||||||||||| ||| ||||||| ||||| | | |||||||||||||||    
T  9527012 gcccaggcccagctccaactttctttgtagcaagcccagccattactagaacttttagcttttcctgcggat 9527083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 508
Target Start/End: Original strand, 37574864 - 37574955
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctct 508  Q
    |||||||||||||| ||||| |||| |||| |||||| ||||  ||| |||| ||||||||| ||||||||  | ||||||| |||||||||    
T  37574864 caggggcggagccacccccacctagtctggacactagtccagactcaacttctactttctttatagcaagtatagccattactagaacctct 37574955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 522
Target Start/End: Original strand, 6331605 - 6331710
Alignment:
Q  416 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    ||||||||||||||| |||||||||||||||||    ||||||| || ||| ||||||||| ||||||||   |||||||||| ||||  | | ||||||    
T  6331605 tcaggggcggagcca-ccccagctagcctgggctagtgcccaggctcggctccaactttctatgtagcaaactcaaccattactagaaattttagctttt 6331703  T
Q  516 cctgcgg 522  Q
    |||||||    
T  6331704 cctgcgg 6331710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 13809994 - 13809949
Alignment:
Q  345 tatacaaaaactatttaactatattttatctttagctaaagaaata 390  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||    
T  13809994 tatacaaaaacaatttaactttattttatcttttgctaaagaaata 13809949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 24745334 - 24745398
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgta 481  Q
    |||||||||||||| |||||  ||| ||||| ||||||||||  |||||| ||||||||||||||    
T  24745334 caggggcggagccacccccaattagtctgggtactagcccagtctcagctccaactttctttgta 24745398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 394
Target Start/End: Complemental strand, 7028289 - 7028239
Alignment:
Q  344 ttatacaaaaactatttaactatattttatctttagctaaagaaatagttt 394  Q
    |||||||||||| | |||||| |||||||||||| |||| |||||||||||    
T  7028289 ttatacaaaaacaacttaactttattttatcttttgctatagaaatagttt 7028239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 24915125 - 24915174
Alignment:
Q  345 tatacaaaaactatttaactatattttatctttagctaaagaaatagttt 394  Q
    ||||||||||| |||||||| |||||||||||  |||| |||||||||||    
T  24915125 tatacaaaaacaatttaactttattttatcttctgctatagaaatagttt 24915174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 415 - 524
Target Start/End: Complemental strand, 21138245 - 21138135
Alignment:
Q  415 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 513  Q
    |||||||||||||||| |||| ||||||| | |||| ||| ||||| |||||||| ||||||||||||||||| | ||||||||| ||||||||||||||    
T  21138245 atcaggggcggagccaccccccagctagcataggcattagtccaggctcagcttctactttctttgtagcaagcctaaccattactagaacctcttgctt 21138146  T
Q  514 ttcctgcggat 524  Q
    |||||||||||    
T  21138145 ttcctgcggat 21138135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 418 - 524
Target Start/End: Complemental strand, 34283081 - 34282974
Alignment:
Q  418 aggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||| ||||| | | |||||||    
T  34283081 aggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaactttctttgtagcaagtccagtcattactagaacttttagcttttc 34282982  T
Q  517 ctgcggat 524  Q
     |||||||    
T  34282981 ttgcggat 34282974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 432 - 522
Target Start/End: Original strand, 12478081 - 12478171
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcgg 522  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||| | |||||||||  ||||||||||||    
T  12478081 ccccagctagcctgggcactagcccaggatcaacttctactttctttgtagcaagtccatctattgctagaacctctctcttttcctgcgg 12478171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 417 - 529
Target Start/End: Original strand, 38214689 - 38214802
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| ||||||||||||||||||||| || |||||| ||| ||||||||||||||||||| ||| ||| ||||| | | ||||||    
T  38214689 caggggcggagccaccccccagctagcctgggcactagcccgggctcagctccaattttctttgtagcaagtccagccaatactagaacttttagctttt 38214788  T
Q  516 cctgcggatattta 529  Q
    ||||||||| ||||    
T  38214789 cctgcggattttta 38214802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 529
Target Start/End: Complemental strand, 27322034 - 27321922
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||| ||| ||||||| | ||| | | | |||||    
T  27322034 caggggcggagccacccccagctagcctgggcacttgcccaggctcagctccaattttctttgtagcaagcccagccattactaaaacttttagtttttc 27321935  T
Q  517 ctgcggatattta 529  Q
    |||||||| ||||    
T  27321934 ctgcggattttta 27321922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 432 - 524
Target Start/End: Original strand, 8968276 - 8968368
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||||||||||| |||||||||||||  |||||||| |||| |||||||||||||||| ||||||| ||||||| |  ||||| ||||||||    
T  8968276 ccccagctagcctaggcactagcccagactcagcttctacttcctttgtagcaagtccagccattactagaacctatcactttttctgcggat 8968368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 24964961 - 24965071
Alignment:
Q  415 atcaggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 513  Q
    |||| ||||||||||| | ||||||||||||||||    ||||||| || ||| ||||||||||||||||||| ||||||||||| ||||  | | ||||    
T  24964961 atcatgggcggagccaccacccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaccattactagaatttttagctt 24965060  T
Q  514 ttcctgcggat 524  Q
    |||||||||||    
T  24965061 ttcctgcggat 24965071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 485
Target Start/End: Complemental strand, 39431843 - 39431790
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 485  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  39431843 ccccagctagcctgggcactagcccgggctcagctccaactttctttgtagcaa 39431790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 523
Target Start/End: Original strand, 28927989 - 28928096
Alignment:
Q  416 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    ||||||||||||||| |||||||||  ||||||    ||||||| || ||| ||||||||||||||||||| | ||||||||| ||||  | | ||||||    
T  28927989 tcaggggcggagccacccccagctattctgggctagtgcccaggctcggctccaactttctttgtagcaagcctaaccattactagaatttttagctttt 28928088  T
Q  516 cctgcgga 523  Q
    ||||||||    
T  28928089 cctgcgga 28928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 497
Target Start/End: Complemental strand, 3384211 - 3384135
Alignment:
Q  421 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 497  Q
    |||||||||| | ||||||||||||||     ||||||| |||||| |||||||||||||||||||||| |||||||    
T  3384211 ggcggagccacctccagctagcctgggttagtgcccaggctcagctccaactttctttgtagcaagtcctaccatta 3384135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 34336293 - 34336235
Alignment:
Q  195 aggctttgtttg-gagatttggagggaaggagaatggaagactttgagggatggaaaata 253  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||    
T  34336293 aggctttgtttgtgag-tttggaggggaggagaatggaagactttgaggggtggaaaata 34336235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 36336659 - 36336722
Alignment:
Q  268 aaacttaggtagtaaatatctccctcaaatttaaattttatgtgcaaatattcccttcaaattt 331  Q
    ||||||| |||| ||||| | |||||||||| ||| ||||||||||||||| ||||||||||||    
T  36336659 aaacttatgtagcaaataccaccctcaaattcaaaatttatgtgcaaatatccccttcaaattt 36336722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 490
Target Start/End: Original strand, 376381 - 376439
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtcca 490  Q
    ||||||||||||||||||||||||| || |||||| | ||||||||| || ||||||||    
T  376381 ccccagctagcctgggcactagcccgggctcagctgctactttctttataccaagtcca 376439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 498
Target Start/End: Complemental strand, 36406686 - 36406604
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 498  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| |||| ||||||    
T  36406686 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaacattac 36406604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 13243025 - 13243057
Alignment:
Q  419 ggggcggagccatccccagctagcctgggcact 451  Q
    |||||||||||| ||||||||||||||||||||    
T  13243025 ggggcggagccacccccagctagcctgggcact 13243057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 50383819 - 50383927
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||| ||||||| ||||| | | ||||||    
T  50383819 caggggcggagccaccccccagctagcctgggcactggcccaggctcagctccaactttctttgtagcaagcccagccattactagaacttttagctttt 50383918  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  50383919 cctgcggat 50383927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 520
Target Start/End: Complemental strand, 15034658 - 15034554
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| | |||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||||| ||||| | | ||||||    
T  15034658 caggggcggagccaccccccaactagcctgggcactagcccaagctcagcttcaactttctttgtaacaagcccaaccattactagaacttttcgctttt 15034559  T
Q  516 cctgc 520  Q
    |||||    
T  15034558 cctgc 15034554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 520
Target Start/End: Original strand, 32828146 - 32828250
Alignment:
Q  417 caggggcggagccat-ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||||| ||| ||||||||||| ||  ||||||||||| ||||| | | ||||||    
T  32828146 caggggcggagccaaaccccagctagcctgggcactagcccaggctcagctccaattttctttgtagtaatcccaaccattactagaacttttagctttt 32828245  T
Q  516 cctgc 520  Q
    |||||    
T  32828246 cctgc 32828250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 418 - 520
Target Start/End: Original strand, 1585642 - 1585744
Alignment:
Q  418 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 517  Q
    ||||||||||||| |||||||||||||||||    ||||||| |||||||||||||||||||||||||| || |||||||| ||||  | | ||||||||    
T  1585642 aggggcggagccacccccagctagcctgggctagtgcccaggctcagcttcaactttctttgtagcaagccctaccattactagaatttttagcttttcc 1585741  T
Q  518 tgc 520  Q
    |||    
T  1585742 tgc 1585744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 2576091 - 2576177
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 503  Q
    |||||||||||||| |||||||||| ||||||    ||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  2576091 caggggcggagccaaccccagctagtctgggctagtgcccaggctcagctccaactttctttgtagcaagcccaaccattacaagaa 2576177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 524
Target Start/End: Original strand, 6017046 - 6017155
Alignment:
Q  416 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||| ||| |||| ||||||||||||||||| || || ||||| ||||| | | |||||    
T  6017046 tcaggggcggagccaccccctagctagcatgggcactagcccaggctcaacttctactttctttgtagcaagcccgactattactagaacttgtcgcttt 6017145  T
Q  515 tcctgcggat 524  Q
    | ||||||||    
T  6017146 ttctgcggat 6017155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 524
Target Start/End: Original strand, 40969154 - 40969263
Alignment:
Q  416 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    ||||||||||||| |||||| |||||||||||||    || |||| |||||||||||||||||||||||||||||||||||||  ||||  | | |||||    
T  40969154 tcaggggcggagctatcccccagctagcctgggctagtgctcaggctcagcttcaactttctttgtagcaagtccaaccattatgagaatttttagcttt 40969253  T
Q  515 tcctgcggat 524  Q
    ||||||||||    
T  40969254 tcctgcggat 40969263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 418 - 524
Target Start/End: Complemental strand, 41972622 - 41972514
Alignment:
Q  418 aggggcggagccatcccc--agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    ||||||||||||| ||||  |||||| ||||||||||||  ||| |||||| ||||||||||||||||||| | ||||||||| ||||| | | ||||||    
T  41972622 aggggcggagccacccccccagctaggctgggcactagcttaggctcagctccaactttctttgtagcaagccgaaccattactagaacttttagctttt 41972523  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  41972522 cctgcggat 41972514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 417 - 504
Target Start/End: Original strand, 25237495 - 25237583
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    |||||||||||||| |||| |||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||  |||||| |||||    
T  25237495 caggggcggagccaccccccagctagcctgagcactagcccaggctcagctccaactttctttgtagtaagtccagtcattactagaac 25237583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 417 - 504
Target Start/End: Original strand, 9003488 - 9003575
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    |||||||| ||||| ||||||||||||| |||||||| ||||| |||||| ||| ||||||||||||||| |||  ||||||||||||    
T  9003488 caggggcgtagccacccccagctagcctaggcactagtccaggctcagctccaattttctttgtagcaagcccagtcattacaagaac 9003575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 31364067 - 31364174
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||    ||||||| || ||| |||||||||||||||||| |||||||||||| ||||  | | | |||||    
T  31364067 caggggcggagccacccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaaatccaaccattactagaaattttagtttttc 31364166  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  31364167 ctgcggat 31364174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 32005846 - 32005953
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||  ||||  | | |||||||    
T  32005846 caggggcggagccacccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattattagaatttttagcttttc 32005945  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  32005946 ctgcggat 32005953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 52373668 - 52373731
Alignment:
Q  415 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttcttt 478  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||    
T  52373668 atcaggggcggagccacccccagctagtctgggcactagcccaggctcagctccaactttcttt 52373731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 504
Target Start/End: Original strand, 9809723 - 9809812
Alignment:
Q  415 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    ||||| |||||||||| ||||| || ||||| |||||| |||||| | ||||  |||||||||||||||||||||| |||||||||||||    
T  9809723 atcagaggcggagccacccccatcttgcctgagcactaacccaggcttagctcaaactttctttgtagcaagtccagccattacaagaac 9809812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 524
Target Start/End: Complemental strand, 31929229 - 31929120
Alignment:
Q  415 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    |||| ||||||| ||| ||||||||||||||||| |||||| ||  | |||||  ||||||||||||||||| |||| |||||| |||| | || |||||    
T  31929229 atcaagggcggaaccacccccagctagcctgggcgctagccaagacttagcttttactttctttgtagcaagcccaatcattactagaatccctcgcttt 31929130  T
Q  515 tcctgcggat 524  Q
    ||||||||||    
T  31929129 tcctgcggat 31929120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 503
Target Start/End: Original strand, 49744972 - 49745057
Alignment:
Q  418 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 503  Q
    ||||||||||||| |||||||||| ||||||||||| ||||| |||||| ||||||||||| || |||||| | ||||||| ||||    
T  49744972 aggggcggagccaaccccagctagtctgggcactagtccaggctcagctccaactttctttataacaagtctagccattactagaa 49745057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 8901735 - 8901814
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 496  Q
    |||||||||||||| | |||||| | ||||||||||||||||| |||||| ||||||||||||||| ||| ||| |||||    
T  8901735 caggggcggagccaccgccagcttgtctgggcactagcccaggctcagctccaactttctttgtagaaagcccagccatt 8901814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 36947447 - 36947520
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtcca 490  Q
    |||||||||||||| ||||||||||| | ||||||||| || | |||||| | |||||||||||||||||||||    
T  36947447 caggggcggagccaaccccagctagcttaggcactagctcaagctcagctcctactttctttgtagcaagtcca 36947520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 524
Target Start/End: Original strand, 4552132 - 4552224
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | |||||||||||||||    
T  4552132 ccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctgcggat 4552224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 504
Target Start/End: Original strand, 9694019 - 9694106
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 504  Q
    ||||||||||| || | |||||||||||| ||||||||||||| |||||| ||| ||||||||||| |||  || ||||||| |||||    
T  9694019 caggggcggagtcacctccagctagcctgtgcactagcccaggctcagctccaattttctttgtagtaagctcagccattactagaac 9694106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 10715585 - 10715694
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgta-gcaagtccaaccattacaagaacctcttgcttt 514  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| |||||||||||||| ||||| ||||||||||| ||||  | | |||||    
T  10715585 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtaagcaagcccaaccattactagaatttttagcttt 10715684  T
Q  515 tcctgcggat 524  Q
    ||||||||||    
T  10715685 tcctgcggat 10715694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 10929355 - 10929464
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgta-gcaagtccaaccattacaagaacctcttgcttt 514  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| |||||||||||||| ||||| ||||||||||| ||||  | | |||||    
T  10929355 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtaagcaagcccaaccattactagaatttttagcttt 10929454  T
Q  515 tcctgcggat 524  Q
    ||||||||||    
T  10929455 tcctgcggat 10929464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 2017622 - 2017514
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||    ||||||| | |||| |||||||||||||||||||  | |||||||| ||||  | | ||||||    
T  2017622 caggggcggagccaccccccagctagcctgggctagtgcccaggcttagctccaactttctttgtagcaagctctaccattactagaatttttagctttt 2017523  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  2017522 cctgcggat 2017514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 524
Target Start/End: Complemental strand, 11827195 - 11827103
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    |||||| |||| |||| ||||||||||| |||||| ||| ||||||||||| ||||| | ||||||| ||||| | | |||||| ||||||||    
T  11827195 ccccagttagcatgggtactagcccaggctcagctccaattttctttgtagtaagtctagccattactagaacttttagctttttctgcggat 11827103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 4728475 - 4728585
Alignment:
Q  415 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 513  Q
    |||||||||||||||| |||| ||||||| |||||    ||||||  || ||| ||||||||||||||||||| | ||||||||| ||||  | | ||||    
T  4728475 atcaggggcggagccaccccccagctagcttgggctagtgcccagactcggctccaactttctttgtagcaagccaaaccattactagaatttttagctt 4728574  T
Q  514 ttcctgcggat 524  Q
    |||||||||||    
T  4728575 ttcctgcggat 4728585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 524
Target Start/End: Original strand, 46645559 - 46645630
Alignment:
Q  453 gcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||||| |||||| |||||| |||||||||||| ||||||||||| ||||  | | |||||| ||||||||    
T  46645559 gcccaggctcagctccaacttcctttgtagcaagcccaaccattactagaatttttagctttttctgcggat 46645630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 524
Target Start/End: Original strand, 14044279 - 14044384
Alignment:
Q  420 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 518  Q
    ||||||||||| |||| ||||||  ||||||||||| |||  |||||| ||| ||||||||||||||| | | ||||||| | ||  | | |||||||||    
T  14044279 gggcggagccaccccccagctagtttgggcactagctcagtctcagctccaattttctttgtagcaagccaagccattacgaaaatttttagcttttcct 14044378  T
Q  519 gcggat 524  Q
    ||||||    
T  14044379 gcggat 14044384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 3155597 - 3155553
Alignment:
Q  347 tacaaaaactatttaactatattttatctttagctaaagaaatag 391  Q
    ||||||||| |||||||| |||||||||||| |||| ||||||||    
T  3155597 tacaaaaacaatttaactttattttatcttttgctatagaaatag 3155553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 417 - 498
Target Start/End: Complemental strand, 21183 - 21101
Alignment:
Q  417 caggggcggagcca-tccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 498  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||| |||||||    
T  21183 caggggcggagccaatccccagctagcctgggcactagcccaggctcagcttcaactttctttgttacaagcccagccattac 21101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 416 - 524
Target Start/End: Complemental strand, 41218569 - 41218460
Alignment:
Q  416 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||| |||||| | |||||| |||||||||| ||| ||||||| ||||| | | |||||    
T  41218569 tcaggggcggagccaccccccagctagcctgagcactagcccaggctcagctccgactttccttgtagcaagcccagccattactagaacttttagcttt 41218470  T
Q  515 tcctgcggat 524  Q
    ||||||||||    
T  41218469 tcctgcggat 41218460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 529
Target Start/End: Original strand, 9600287 - 9600399
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||| | | ||||||||||| ||  ||| ||||||| ||||| | | |||||||    
T  9600287 caggggcggagccacccccagctagcctgggcactagcccaagctcagctcctattttctttgtagtaatcccagccattactagaacttttggcttttc 9600386  T
Q  517 ctgcggatattta 529  Q
    |||||||| ||||    
T  9600387 ctgcggattttta 9600399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 37516567 - 37516674
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||    ||||||| || | | ||||||||||||||||||||||||||||||| ||||  | | |||||||    
T  37516567 caggggcggagccacccccagctagcctgggctagtgcccaggctcggttccaactttctttgtagcaagtccaaccattactagaatttttagcttttc 37516666  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  37516667 ctgcggat 37516674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 53651835 - 53651942
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | |||||||    
T  53651835 caggggcggagccacccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttttc 53651934  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  53651935 ctgcggat 53651942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 420 - 521
Target Start/End: Complemental strand, 33179306 - 33179204
Alignment:
Q  420 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 518  Q
    |||||||||||||||| | |||||||||||||||||  ||| |||||| ||||||| ||||||||||||||| ||||||| ||||| | | |||||||||    
T  33179306 gggcggagccatcccccaactagcctgggcactagcttaggctcagctccaactttttttgtagcaagtccagccattactagaacttttagcttttcct 33179207  T
Q  519 gcg 521  Q
    |||    
T  33179206 gcg 33179204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 524
Target Start/End: Complemental strand, 41200077 - 41199967
Alignment:
Q  415 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 513  Q
    |||||||||||||||| |||| || ||||||| ||||||||||||| |||||||| ||||| ||||||| ||| ||| | ||||| |||||||||  |||    
T  41200077 atcaggggcggagccaccccccagttagcctgagcactagcccaggctcagcttctactttttttgtagtaagcccagcaattactagaacctctgcctt 41199978  T
Q  514 ttcctgcggat 524  Q
    |||||||||||    
T  41199977 ttcctgcggat 41199967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 529
Target Start/End: Original strand, 53987800 - 53987913
Alignment:
Q  417 caggggcggagccatccc-cagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| ||| |||||||| |||||||||| ||||| |||||||||| |||||||||||  ||  |||||||||| ||||| | | ||||||    
T  53987800 caggggcggagccacccctcagctagcttgggcactagtccaggctcagcttcaattttctttgtagtcagctcaaccattactagaacttttagctttt 53987899  T
Q  516 cctgcggatattta 529  Q
    ||||||||| ||||    
T  53987900 cctgcggattttta 53987913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 26278289 - 26278395
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| |||||| | | ||||||| ||||  | | |||||||    
T  26278289 caggggcggagcca-ccccagctagcctgggcactagcccaggctcagctccaattttctttggagcaagcctagccattactagaatttttagcttttc 26278387  T
Q  517 ctgcggat 524  Q
     |||||||    
T  26278388 atgcggat 26278395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 423 - 524
Target Start/End: Complemental strand, 41358805 - 41358704
Alignment:
Q  423 cggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcgg 522  Q
    |||||||| ||||||||||||||||| |||| ||||  |||||||| ||||||||||||||||   |||||||||  ||||| ||| ||||||||| |||    
T  41358805 cggagccacccccagctagcctgggcgctagtccagactcagcttctactttctttgtagcaaactcaaccattattagaacttctcgcttttcctacgg 41358706  T
Q  523 at 524  Q
    ||    
T  41358705 at 41358704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 515
Target Start/End: Original strand, 38239388 - 38239488
Alignment:
Q  415 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    |||||||||||||||| ||||||||| |||||||||| | ||||| ||| |||  ||| |||||||||||||| || ||||||| | ||||||| |||||    
T  38239388 atcaggggcggagccacccccagctaacctgggcactcgtccaggctcaacttttactatctttgtagcaagttcagccattactataacctctcgcttt 38239487  T
Q  515 t 515  Q
    |    
T  38239488 t 38239488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 49613732 - 49613641
Alignment:
Q  105 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 196  Q
    |||||||||||| |||  ||| |||||| | |||||||||||| ||||||| | |  |||||||||||| ||||||||||||||||||||||    
T  49613732 aaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaacctcaaatcaagtaaacactcacttttag 49613641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 44047520 - 44047628
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggc-actagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 514  Q
    |||||||||||||| |||| ||||||||||||| | || |||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | |||||    
T  44047520 caggggcggagccaccccccagctagcctgggctagta-cccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttt 44047618  T
Q  515 tcctgcggat 524  Q
    ||||||||||    
T  44047619 tcctgcggat 44047628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 25392009 - 25391901
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| |||||||||| |||||||| || |||||||| ||||  | | ||||||    
T  25392009 caggggcggagccaccccccagctagcctgggctaatgcccaggctcagctccaactttcttcgtagcaagccctaccattactagaatttttagctttt 25391910  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  25391909 cctgcggat 25391901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 524
Target Start/End: Complemental strand, 47511826 - 47511721
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 516  Q
    ||||||||||| || |||| |||||| ||| |||||| ||||  |||||||| | |||||||||| |||||||| ||||||| ||||||| | |||||||    
T  47511826 caggggcggagaca-ccccggctagcatggacactagtccagc-tcagcttctaatttctttgtaacaagtccagccattactagaacctttcgcttttc 47511729  T
Q  517 ctgcggat 524  Q
    ||||||||    
T  47511728 ctgcggat 47511721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 49618723 - 49618640
Alignment:
Q  102 tccaaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaaca 185  Q
    |||||| ||| || ||||| | || ||||||||||||||||||||| ||||||||| |   |||||||||||||||||||||||    
T  49618723 tccaaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccggaaaacctcaagtcaagtaaaca 49618640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 524
Target Start/End: Original strand, 7500915 - 7500988
Alignment:
Q  451 tagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 524  Q
    ||||||||| || ||| ||||||||||||||||||| ||||||||||| ||||  | | |||||||||||||||    
T  7500915 tagcccaggctcggctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggat 7500988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 54845987 - 54846068
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 498  Q
    |||||| ||| ||| ||||||||||| ||| |||||||||||  ||| |||| |||||||||||||||||| || |||||||    
T  54845987 caggggtggaaccacccccagctagcttggacactagcccagactcaacttctactttctttgtagcaagttcatccattac 54846068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 518
Target Start/End: Original strand, 43447476 - 43447571
Alignment:
Q  418 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 517  Q
    |||| |||||||| || ||| |||||||||||||||| |||| |||| ||| ||||| ||||||||||||     |||||| ||||||||| ||||||||    
T  43447476 agggacggagccaccctcagttagcctgggcactagctcaggctcagtttctactttttttgtagcaagt-----cattaccagaacctctcgcttttcc 43447570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 520
Target Start/End: Original strand, 44625634 - 44625738
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| ||||| ||||| ||||  | | ||||||    
T  44625634 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaactattactagaatttttagctttt 44625733  T
Q  516 cctgc 520  Q
    |||||    
T  44625734 cctgc 44625738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 12909763 - 12909864
Alignment:
Q  417 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    |||||||||||||| |||| |||||||||||||       |||| |||||| ||||||||||||||||||| || |||||||| ||||  | | ||||||    
T  12909763 caggggcggagccaccccccagctagcctgggc-------caggctcagctccaactttctttgtagcaagccctaccattactagaatttttagctttt 12909855  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  12909856 cctgcggat 12909864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 529
Target Start/End: Original strand, 14461007 - 14461114
Alignment:
Q  419 ggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 518  Q
    |||||||||||  ||||||| |||||||||    ||||||| |||||| ||| ||||||||||||||| || |||||||| ||||  | |  ||||||||    
T  14461007 ggggcggagcctcccccagcgagcctgggct---gcccaggctcagctccaattttctttgtagcaagccctaccattactagaatttttaacttttcct 14461103  T
Q  519 gcggatattta 529  Q
    |||||| ||||    
T  14461104 gcggattttta 14461114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 30956700 - 30956746
Alignment:
Q  345 tatacaaaaactatttaactatattttatctttagctaaagaaatag 391  Q
    ||||||||||| |||||||| |||||||||||| |||| ||||||||    
T  30956700 tatacaaaaacaatttaactttattttatcttttgctatagaaatag 30956746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 30972512 - 30972558
Alignment:
Q  345 tatacaaaaactatttaactatattttatctttagctaaagaaatag 391  Q
    ||||||||||| |||||||| |||||||||||| |||| ||||||||    
T  30972512 tatacaaaaacaatttaactttattttatcttttgctatagaaatag 30972558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 43700333 - 43700235
Alignment:
Q  422 gcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgc 520  Q
    ||||||||| |||||| |||||||| |    || |||| || ||| ||||||||||||||||||| ||||||||||| ||||  | | |||||||||||    
T  43700333 gcggagccacccccagttagcctggactagtgctcaggctcggctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgc 43700235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 521
Target Start/End: Original strand, 4045 - 4134
Alignment:
Q  432 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcg 521  Q
    |||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||| ||| ||||||| ||||| | | ||||||||||||    
T  4045 ccccagttagcctgggcactagcccaggctcagctccaattttctttgtagcaagcccagccattactagaacttttagcttttcctgcg 4134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 524
Target Start/End: Original strand, 6843 - 6949
Alignment:
Q  419 ggggcggagccatcccca-gctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 517  Q
    |||||||||||  ||||| ||||||||||||||||||||||  | |||| ||||||||||||||||||| || |||||||| ||||  | | ||||||||    
T  6843 ggggcggagcctcccccaagctagcctgggcactagcccagacttagctccaactttctttgtagcaagccctaccattactagaatttttagcttttcc 6942  T
Q  518 tgcggat 524  Q
    |||||||    
T  6943 tgcggat 6949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 524
Target Start/End: Original strand, 11455 - 11562
Alignment:
Q  416 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 515  Q
    ||||||||||||||| ||||||||||||||| |    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | || |||||    
T  11455 tcaggggcggagccacccccagctagcctggactagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaa-ttttttctttt 11553  T
Q  516 cctgcggat 524  Q
    |||||||||    
T  11554 cctgcggat 11562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 109494 - 109427
Alignment:
Q  417 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 485  Q
    |||||| ||||||| ||||||||||| |||||||||| ||||| |||||| ||||||||||||||||||    
T  109494 caggggtggagcca-ccccagctagcttgggcactagtccaggctcagctccaactttctttgtagcaa 109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 5799 - 5861
Alignment:
Q  191 ttttaggctttgtttggagatttggagggaaggagaatggaagactttgagggatggaaaata 253  Q
    ||||||| |||||||||   ||||||||||||  ||| ||||||||||||||| |||||||||    
T  5799 ttttaggttttgtttgggagtttggagggaagaggaagggaagactttgaggggtggaaaata 5861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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