View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791-INSERTION-3 (Length: 651)
Name: NF0791-INSERTION-3
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791-INSERTION-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 8 - 651
Target Start/End: Complemental strand, 36934534 - 36933890
Alignment:
| Q |
8 |
gacaggatcctttgagacattaagctgaagtttttcacgctttcgtttcacaggttttcgagatcctggtgcatcattgctctccctttcactatcactc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36934534 |
gacaggatcctttgagacattaagctgaagtttttcacgctttcgtttcacaggttttcgagatcctggtgcatcattgctctccctttcactatcactc |
36934435 |
T |
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| Q |
108 |
tcttcctgtcgatgtcaggtacagaaaagtaaatctcaattcagaagaatacaacttccccggaaaccaacccatctcaacaaacgtaagagagatgtaa |
207 |
Q |
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| T |
36934434 |
tcttcctgtcgatgtcaggtacagaaaagtaaatctcaattcagaagaatacaacttccccagaaaccaacccatctcaacaaacataagagagatgtaa |
36934335 |
T |
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| Q |
208 |
atccaagtgtaagcatgaactacatcatttataatgtcaggatagttgctgaagaaatagagatggaaatactatactgcagaagtgaggtctgaccatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36934334 |
atccaagtgtaagcatgaactacatcatttataatgtcaggatagttgctgaagaaatagagatgggaatactatactgcagaagtgaggtctgaccatc |
36934235 |
T |
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| Q |
308 |
ggggcaaagaacaagataacattaaatttagttctcaacagaatatgttcacccttctttctgaaaatattttgcttttctaaaagatatttccagacca |
407 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36934234 |
ggggcaaagaacaagataacattaaatttagttctgaacagaatatgttcacccatctttctgaaaatattttgcttttctaaaagatatttccagacca |
36934135 |
T |
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| Q |
408 |
aaagctgtttagaaattttgttaaggaaaaaaggaagacctacaccacaac-nnnnnnntaatgttgaccttaccaggacattataatgatctgtcatca |
506 |
Q |
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| T |
36934134 |
aaagttgtttagaaattttgttaaggaaaaaaggaagacctacaccacaacgaaaaaaataatgttgaccttaccaggacattataatgatctgtcatca |
36934035 |
T |
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| Q |
507 |
ttgcaatgaggccaacaacagaagccgtcccctctggtagagatagatatgcctgttaatcacaaatagtggtttcaatggcacttaacgcaagagatct |
606 |
Q |
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| T |
36934034 |
ttgcaatgaggccaacaacagaagccgttccctctggtagagatagatatgcctgttaatcacaaatagtggtttcaatggcacttaacgcaagagatct |
36933935 |
T |
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| Q |
607 |
acacagcattaataatccagttcatgatggcttgatatccattaa |
651 |
Q |
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| T |
36933934 |
acacagcattaataatccagttcatgatggcttgatatccattaa |
36933890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 485 - 634
Target Start/End: Complemental strand, 41525984 - 41525827
Alignment:
| Q |
485 |
acattataatgatctgtcatcattgcaatgaggccaacaacagaagcc--gtcccctctggtagagatagatatgcctgttaatcacaaatagtg----- |
577 |
Q |
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| T |
41525984 |
acattataatgatgtttcatcaaagcaatgaagcctacaacagacgcgctgtcccctgtggtagagatagatatgcatgttaataacaaataatgatact |
41525885 |
T |
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| Q |
578 |
-gtttcaatggcacttaacgcaagagatctacacagcattaataatccagttcatgat |
634 |
Q |
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| T |
41525884 |
ggtttcaatggcacttaacacaagagatctacacggcattaataattcagttcatgat |
41525827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 560
Target Start/End: Complemental strand, 49431627 - 49431543
Alignment:
| Q |
476 |
cttaccaggacattataatgatctgtcatcattgcaatgaggccaacaacagaagccgtcccctctggtagagatagatatgcct |
560 |
Q |
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| T |
49431627 |
cttaccagaatactataatggtctgtcatcattgctatcagcccaaccacagaagcagtgccctctggaagagacaggtatgcct |
49431543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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