View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791-INSERTION-4 (Length: 652)

Name: NF0791-INSERTION-4
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791-INSERTION-4
NF0791-INSERTION-4
[»] chr2 (6 HSPs)
chr2 (380-652)||(35102671-35102943)
chr2 (407-652)||(35042591-35042836)
chr2 (373-612)||(35128297-35128534)
chr2 (555-652)||(35095385-35095482)
chr2 (530-579)||(35051860-35051909)
chr2 (407-467)||(35175290-35175350)
[»] chr7 (5 HSPs)
chr7 (410-449)||(25429905-25429944)
chr7 (490-587)||(25448213-25448310)
chr7 (539-587)||(25433133-25433181)
chr7 (490-578)||(25488138-25488226)
chr7 (418-446)||(25640897-25640925)
[»] chr5 (1 HSPs)
chr5 (490-587)||(496899-496996)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 3e-87; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 380 - 652
Target Start/End: Complemental strand, 35102943 - 35102671
Alignment:
Q  380 acttatgattgctaattccttcttgataggatcttccttatttgaaaaggatggatttgagcaactccaagtatcttatagagactccaaagnnnnnnnc 479  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||            
T  35102943 acttatgattgctaattcctttttgataggatctcccttatttgaaaaggatggatttgagcaactccaagtttcttacagagactccaaagtttttctg 35102844  T
Q  480 agccccaaaacttgagcggctagattttaccggatacacaaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagtttg 579  Q
      |||||| |||||||||||||||||||||||||| |||||| |||||| | || ||||||||||||||||||||||||||||||| |||||||||||||    
T  35102843 gaccccaatacttgagcggctagattttaccggatgcacaaacttaatacaggttcatccatcaattggacatcttacagaacttgttttcttaagtttg 35102744  T
Q  580 caaaactgcagcagtttgatcaaccttgattttggtagcgtaccaattttaagttctttgagagttctacgcc 652  Q
    |||||||||||||||||| ||||||| ||||||||||  ||| ||| ||||  ||||||||||||||||||||    
T  35102743 caaaactgcagcagtttggtcaacctcgattttggtattgtatcaaatttatattctttgagagttctacgcc 35102671  T

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Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 407 - 652
Target Start/End: Complemental strand, 35042836 - 35042591
Alignment:
Q  407 aggatcttccttatttgaaaaggatggatttgagcaactccaagtatcttatagagactccaaagnnnnnnncagccccaaaacttgagcggctagattt 506  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| ||||||||    
T  35042836 aggatctcccttatttgaaaaggatggatttgagcaactccaagtatcttatagagactccaaagtttttttggaccccaaaacttgagcgactagattt 35042737  T
Q  507 taccggatacacaaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagtttgcaaaactgcagcagtttgatcaacctt 606  Q
    ||| |||| |||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||||    
T  35042736 tacgggatgcacaaacttaatacatgtccattcatcaattggacatcttacagaacttgttttcttaagtttgcaaaactgcagcagtttggttgacctt 35042637  T
Q  607 gattttggtagcgtaccaattttaagttctttgagagttctacgcc 652  Q
    || || ||||| ||| ||| ||||||||||||   |||||||||||    
T  35042636 gacttcggtagtgtatcaaatttaagttctttccaagttctacgcc 35042591  T

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Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 373 - 612
Target Start/End: Original strand, 35128297 - 35128534
Alignment:
Q  373 catctttacttatgattgctaattccttcttgataggatcttccttatttgaaaaggatggatttgagcaactccaagtatcttatagagactccaaagn 472  Q
    |||||||||| ||| || |||||||  |||| | | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||     
T  35128297 catctttactgatggttcctaattc--tctttacaagatcttccttgtttgaaaaggatggatttgatcaactccaagtatcttatagagagtccatagt 35128394  T
Q  473 nnnnnncagccccaaaacttgagcggctagattttaccggatacacaaagttaataaatgtccatccatcaattggacatcttacagaacttgctttctt 572  Q
             ||||||||||| ||||| |||||||||  |||| |||||| |||||| | ||||||||| |||||||||||||||||||||||| ||||||    
T  35128395 ttttttttaccccaaaactttagcggttagattttattggatgcacaaacttaatacaggtccatccagcaattggacatcttacagaacttgttttctt 35128494  T
Q  573 aagtttgcaaaactgcagcagtttgatcaaccttgatttt 612  Q
    || ||| |||||| ||||||||||| || |||| ||||||    
T  35128495 aaatttacaaaacagcagcagtttggtcgacctcgatttt 35128534  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 555 - 652
Target Start/End: Complemental strand, 35095482 - 35095385
Alignment:
Q  555 tacagaacttgctttcttaagtttgcaaaactgcagcagtttgatcaaccttgattttggtagcgtaccaattttaagttctttgagagttctacgcc 652  Q
    |||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||    
T  35095482 tacaaaacttgttttcttaagtttgcaaaactgcagcagtttggtcaaccttgattttggtagtgtatcaaatttatgttctttgagagttctacgcc 35095385  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 579
Target Start/End: Complemental strand, 35051909 - 35051860
Alignment:
Q  530 atgtccatccatcaattggacatcttacagaacttgctttcttaagtttg 579  Q
    ||||||||||||| ||||||| ||| | ||||||||||||||| ||||||    
T  35051909 atgtccatccatccattggacttctaaaagaacttgctttcttgagtttg 35051860  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 35175350 - 35175290
Alignment:
Q  407 aggatcttccttatttgaaaaggatggatttgagcaactccaagtatcttatagagactcc 467  Q
    ||||||| |||| |||||||||| ||||| | ||||||||||| |||||| | ||||||||    
T  35175350 aggatctcccttgtttgaaaagggtggatctcagcaactccaaatatcttctggagactcc 35175290  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 25429944 - 25429905
Alignment:
Q  410 atcttccttatttgaaaaggatggatttgagcaactccaa 449  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  25429944 atcttccctatttgaaaaggatggatctgagcaactccaa 25429905  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 587
Target Start/End: Original strand, 25448213 - 25448310
Alignment:
Q  490 cttgagcggctagattttaccggatacacaaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagtttgcaaaactg 587  Q
    ||||||||||||||| |||| |||| ||  || |||  | ||||  ||||||||||||||| ||||  ||||||||  ||||| ||||||||||||||    
T  25448213 cttgagcggctagatcttacaggatgcattaacttatcacatgtggatccatcaattggacttcttgaagaacttgtattcttgagtttgcaaaactg 25448310  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 587
Target Start/End: Complemental strand, 25433181 - 25433133
Alignment:
Q  539 catcaattggacatcttacagaacttgctttcttaagtttgcaaaactg 587  Q
    |||||||||||| ||||||| ||||||  ||||| ||||||||||||||    
T  25433181 catcaattggacttcttacaaaacttgtattcttgagtttgcaaaactg 25433133  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 578
Target Start/End: Original strand, 25488138 - 25488226
Alignment:
Q  490 cttgagcggctagattttaccggatacacaaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagttt 578  Q
    |||||||||||||||||||| |||| || ||| |||    ||||  ||||||||||||||| |||||| |||||||  ||||| |||||    
T  25488138 cttgagcggctagattttacaggatgcataaacttatcgcatgtggatccatcaattggacttcttactgaacttgtattcttgagttt 25488226  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 446
Target Start/End: Original strand, 25640897 - 25640925
Alignment:
Q  418 tatttgaaaaggatggatttgagcaactc 446  Q
    |||||||||||||||||||||||||||||    
T  25640897 tatttgaaaaggatggatttgagcaactc 25640925  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 587
Target Start/End: Complemental strand, 496996 - 496899
Alignment:
Q  490 cttgagcggctagattttaccggatacacaaagttaataaatgtccatccatcaattggacatcttacagaacttgctttcttaagtttgcaaaactg 587  Q
    ||||||||| |||||||||| |||| || ||| ||  |  | || ||||||||| |||||| ||||||||||||||  ||||| |||||||| |||||    
T  496996 cttgagcggatagattttacaggatgcataaacttgttgcaggtgcatccatcagttggacttcttacagaacttgtattcttgagtttgcagaactg 496899  T

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