View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791-INSERTION-5 (Length: 724)
Name: NF0791-INSERTION-5
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791-INSERTION-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 6 - 724
Target Start/End: Original strand, 56098210 - 56098930
Alignment:
| Q |
6 |
caattaggccctatttttgtcctttagtgtctgattcctctgttctcgagtaaagctacgtacagaaacacctgacacacgctccctctcccaacaacac |
105 |
Q |
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| T |
56098210 |
caattaggccctctttttgtcctttagtgtctgattcctctgttctcgagtaaagctacgtacagaaacacctgacacacgctccctctcccaacaacac |
56098309 |
T |
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| Q |
106 |
ctacctataaagtcttaggttagtc-ttaacccactctactctaattgggccccctcaccaccgacccatcctacttgtcatttcctctttcgttctctc |
204 |
Q |
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| T |
56098310 |
ctacctataaagtcttaggttagtccttaacccactctactctaattgggccccctcaccaccgacccatcctacttgtcatttcctctttcgttctctc |
56098409 |
T |
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| Q |
205 |
ttcaactataatctcacgtgtacacataccatttgctacacccttaactatcttatcactatgtttcatttcattcatacatacatctgcatttatggac |
304 |
Q |
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| T |
56098410 |
ttcaactataatctcacgtgtacacataccatttgctacacccttaactatcttatcactatgtttcatttcattcatacatacatctgcatttatggac |
56098509 |
T |
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| Q |
305 |
atgttaaaaatatttaatttgattaaaaaattaattcaactttcagtcaaaattgaaatggtatcaaatagtatttggattagattacatgaattttgtt |
404 |
Q |
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| T |
56098510 |
atgttaaaaatatttaatttgattaaaaaattaattcaactttcagtcaaaattgaaatggtatcaaa---tatttggattaga-tacatgaattttgtt |
56098605 |
T |
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| Q |
405 |
tgacc-----aaattagttgagtattaaatatgaatgagatggatgcagcagtagcaggcgggacgttgaagct---atcagtttctgagatgaacacga |
496 |
Q |
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| T |
56098606 |
tgaccaaattaaattagttgagtattaaatatgaatgagatggatgcagcagtagca---gggacgttgaagctatcatcagtttctgagatgaacacga |
56098702 |
T |
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| Q |
497 |
ggcagcaagtaggagaacagaacaacaatggaacagaacaagacaatgaatgcattgtgagggaacaagaccgttttatgccaattgcaaatgtgataag |
596 |
Q |
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| T |
56098703 |
ggcagcaagtaggagaacagaacaacaatggtacagaacaagacaatgaatgcattgtgagggaacaagaccgttttatgccaattgcaaatgtgataag |
56098802 |
T |
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| Q |
597 |
gatcatgcgcaaaattctaccaccacatgcaaaaatatctgatgatgcaaaagaaacaatccaagagtgtgtgtctgagtacatcagcttcataactgga |
696 |
Q |
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| T |
56098803 |
gatcatgcgcaagattctaccaccacatgcaaaaatatctgatgatgcaaaagaaacaatccaagagtgtgtgtctgagtacatcagcttcataactgga |
56098902 |
T |
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| Q |
697 |
gaagccaatgaacgttgtcagagagagc |
724 |
Q |
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| T |
56098903 |
gaagccaatgaacgttgtcagagagagc |
56098930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 643 - 701
Target Start/End: Original strand, 9722705 - 9722763
Alignment:
| Q |
643 |
gcaaaagaaacaatccaagagtgtgtgtctgagtacatcagcttcataactggagaagc |
701 |
Q |
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|||||||||||| | ||||||||||| || |||| ||||| ||||||||||||||||| |
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| T |
9722705 |
gcaaaagaaacagtacaagagtgtgtatcagagtttatcagtttcataactggagaagc |
9722763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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