View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791-INSERTION-6 (Length: 741)
Name: NF0791-INSERTION-6
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791-INSERTION-6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 220 - 704
Target Start/End: Original strand, 36956064 - 36956548
Alignment:
| Q |
220 |
cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
36956064 |
cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacaatctatgtcatgca |
36956163 |
T |
|
| Q |
320 |
atgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgc |
419 |
Q |
| |
|
||||| || | |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36956164 |
atgttccatgttttcattatcttcatcacaatatcattgttcagttcaattagtgctaccatcatactcttttgggcaacacttggattaactgaattgg |
36956263 |
T |
|
| Q |
420 |
tgacttttactctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaact |
519 |
Q |
| |
|
| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
36956264 |
taacttttactctcaaaattgttgtgccgcttcttggaatcgctctcatttcattatcttttgctttcattgctggtctgtacactgttattagtgaact |
36956363 |
T |
|
| Q |
520 |
tacttggttggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagc |
619 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
36956364 |
taattggttggcaaatgtgtttctggttatggctctgatttttgttgcggttgtgatttttttatatatgcttcttttccttccatcatcatcaactagc |
36956463 |
T |
|
| Q |
620 |
aagccattgtggtacatttctcactacccttatcttttcttggcatcactaactgaaagtaaacctgatcaaaatgttaatcatt |
704 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |
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|
| T |
36956464 |
aagccattgcggtacatttctcactacccttttcttttcttggcatcacaaactgaaagtaaacctgatcaagatgttattcatt |
36956548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 224 - 691
Target Start/End: Original strand, 36935214 - 36935681
Alignment:
| Q |
224 |
acaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgt |
323 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| || |||||| ||||| |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
36935214 |
acaattgtttcaacacttataatcactgcttcagtagcagcatgtttagccgttccatgtgaagcagaaggaaaagcacacaatctatgtcatacaatgt |
36935313 |
T |
|
| Q |
324 |
ttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgac |
423 |
Q |
| |
|
|||| || |||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
36935314 |
ttcatgctttcattatcttcatcacagtatcattgttcagttccattagtgctaccatcatactcttttgggcaacatttgggttaactgaattgctgac |
36935413 |
T |
|
| Q |
424 |
ttttactctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttact |
523 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
36935414 |
tttacctctcaaaatcgttatgccgcttcttggaatcgctcttattgcattatctttggctttcatggctggtctctacactgttatcagtgaactacgt |
36935513 |
T |
|
| Q |
524 |
tggttggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaagc |
623 |
Q |
| |
|
||||| | |||||||||||||||||||| || |||||||| || ||||||| |||| |||||||||||||||||||| ||||||||||||| | |
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|
| T |
36935514 |
cggttgtccaatgtgtttctggttatggcactgatttttgtcgccgttgtgattttgttatatgtgcttcttttccttccatcaccatcaactagcaacc |
36935613 |
T |
|
| Q |
624 |
cattgtggtacatttctcactacccttatcttttcttggcatcactaactgaaagtaaacctgatcaa |
691 |
Q |
| |
|
| ||| ||||||||||||| || || |||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
36935614 |
ccttgcggtacatttctcattatccatatctttttttggcatcacgaactgaaagtaaacctgatcaa |
36935681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 230 - 657
Target Start/End: Original strand, 36947998 - 36948425
Alignment:
| Q |
230 |
gtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgtttcaag |
329 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
36947998 |
gtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatgtcatgcaatgtttcaag |
36948097 |
T |
|
| Q |
330 |
cattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgacttttac |
429 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| || | |
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|
| T |
36948098 |
cattcattatcttcatcacaatatcattattcagttccattagttctattatcatactcttttgggcaacacttggattaactgaattggtgaaattctc |
36948197 |
T |
|
| Q |
430 |
tctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggttg |
529 |
Q |
| |
|
||| ||||| |||||||| | ||||||||||||||||| ||| | ||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
36948198 |
tctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcagtgaacttacttggttg |
36948297 |
T |
|
| Q |
530 |
gcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaagccattgt |
629 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
36948298 |
gcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatcaactagcataccattgc |
36948397 |
T |
|
| Q |
630 |
ggtacatttctcactacccttatctttt |
657 |
Q |
| |
|
|||||||||| ||||||| | |||||| |
|
|
| T |
36948398 |
ggtacatttcctactacccctttctttt |
36948425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 221 - 531
Target Start/End: Complemental strand, 37069970 - 37069660
Alignment:
| Q |
221 |
ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaa |
320 |
Q |
| |
|
|||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | || ||||||||| |||| || |||||||||| |
|
|
| T |
37069970 |
ctcacattggtttcaacacttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctatgtcatgcaa |
37069871 |
T |
|
| Q |
321 |
tgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgct |
420 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||| | |
|
|
| T |
37069870 |
tgttccaagctttcattatcttcatcacaatatcattgttcagttccattagttctactatcatactctttttggcaaaacttggattaactgaattggt |
37069771 |
T |
|
| Q |
421 |
gacttttactctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaactt |
520 |
Q |
| |
|
|||||| | || |||||||| |||| || ||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
37069770 |
gactttctcactgaaaatcgtgttgccacttcttggaaccgctctcatttctctatctttggctttcatgactggtctctacactgttatcagtgaactt |
37069671 |
T |
|
| Q |
521 |
acttggttggc |
531 |
Q |
| |
|
||||||||||| |
|
|
| T |
37069670 |
acttggttggc |
37069660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 221 - 574
Target Start/End: Complemental strand, 37079730 - 37079377
Alignment:
| Q |
221 |
ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaa |
320 |
Q |
| |
|
|||||| | |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| | || ||||||||| |||| || |||||||||| |
|
|
| T |
37079730 |
ctcacattggtttcaacccttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctatgtcatgcaa |
37079631 |
T |
|
| Q |
321 |
tgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgct |
420 |
Q |
| |
|
|||| || | |||||||| ||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||| |||||| || |||||||| | |
|
|
| T |
37079630 |
tgttccatgttttcattatattcatcacaatatcattgttcagttccattagttctactatcatactcttttgggcaaagcttggaatacctgaattggt |
37079531 |
T |
|
| Q |
421 |
gacttttactctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaactt |
520 |
Q |
| |
|
|||||| |||| ||||| || ||||| || ||||||||||||||| | ||| ||||||| ||||| || ||||| |||||||||||||| ||||||||| |
|
|
| T |
37079530 |
gactttctctctgaaaattgtgatgccacttcttggaatcgctctcgtctcactatctttggcttttatggctggactctacactgttatcagtgaactt |
37079431 |
T |
|
| Q |
521 |
acttggttggcaaatgtgtttctggttatggctctaatttttgttgcggttgtg |
574 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||||| |||| ||||||| |
|
|
| T |
37079430 |
acttggttggcaaatgtgtttctggttgtagcttcaattttggttgtggttgtg |
37079377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 36955858 - 36955941
Alignment:
| Q |
8 |
catattgaatccaaaccaagcaattcaaattcatcagaaacagaatcaaataaagaccaaaatgaagacaatgctgaagcatct |
91 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||| ||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
36955858 |
catattgaatccaaaccaagcgattcaaattcatcaaaaatagaatcagatatagaccaaaatgaagacaatgttgaagcatct |
36955941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 36971668 - 36971718
Alignment:
| Q |
230 |
gtttcaacacttataatcacagcatcagtagcagcatgttttgctgttcca |
280 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
36971668 |
gtttcaacacttataatcactgcatcagtagcagcatgttttggtgttcca |
36971718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 224 - 690
Target Start/End: Complemental strand, 12493756 - 12493290
Alignment:
| Q |
224 |
acaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgt |
323 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
12493756 |
acaattgtttcaacacttataatcactgcttcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacagcctatgtcatgcaatgt |
12493657 |
T |
|
| Q |
324 |
ttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgac |
423 |
Q |
| |
|
| || || ||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | || |
|
|
| T |
12493656 |
tccatgctttcattatcttcatcacaatatcgttgttcagttccattagtgctactatcatactcttttgggcaacacttgggttaactgaattggtaac |
12493557 |
T |
|
| Q |
424 |
ttttactctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttact |
523 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||||||||||||||| |||||||| |||||||| ||| |||| |||||||||||||||||||||||| |
|
|
| T |
12493556 |
ttttactctcaaaatggtcatgccgcttcttggaatcgctctcatttcgttatctttggctttcatggctagtctttacactgttattagtgaacttact |
12493457 |
T |
|
| Q |
524 |
tggttggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaagc |
623 |
Q |
| |
|
|||||| ||||||||| |||||||||||| | |||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12493456 |
tggttgtcaaatgtgtctctggttatggcattgatttttattgcggttgtgattgcgttatatatgctcagtttccttccatcatcatcaactagcaagc |
12493357 |
T |
|
| Q |
624 |
cattgtggtacatttctcactacccttatcttttcttggcatcactaactgaaagtaaacctgatca |
690 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
12493356 |
cattgcggtacatttctcactacctttatctttttttggcatcacgaactgaaagtaaacatgatca |
12493290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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