View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791-INSERTION-7 (Length: 735)
Name: NF0791-INSERTION-7
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791-INSERTION-7 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 518 - 735
Target Start/End: Original strand, 30413150 - 30413367
Alignment:
| Q |
518 |
atagaaaagattgtgaggtcattggaaccacttcagaattctaatgacacaattagtggtgtggagagctcttaatctcaacatcaaacaaccatcaaag |
617 |
Q |
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| T |
30413150 |
atagaaaagattgtgagatcattggaaccacttcagaattctaatgacccaattagtggtgtggagagctcttaatctcaacatcaaacaaccatcaaag |
30413249 |
T |
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| Q |
618 |
tataaagggtcatatatcaagcattagtggtttagaacaacattgaaaaagagccgaatgtatctttaagtgaagaaataaatgaaatgtcataatagca |
717 |
Q |
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| T |
30413250 |
tataaagggtcatatatcaagcattagtggtttagaacaacattgaaaaagagccaaatgtatctttaagtgaagaaataaatgaaatgtcataatagca |
30413349 |
T |
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| Q |
718 |
acttcaatggaagtatct |
735 |
Q |
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| T |
30413350 |
acttcaatggaagtatct |
30413367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 207 - 597
Target Start/End: Original strand, 30412019 - 30412408
Alignment:
| Q |
207 |
cctacaattttactcctaaccatttatttcattgtattttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattgga |
306 |
Q |
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| T |
30412019 |
cctacaattttactcctaacctttt-tctcattgtcatttttgtgaagattacctaaccaaggagaatgatgtatacaattttggggttgttctcctgga |
30412117 |
T |
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| Q |
307 |
aatcacgttaggcaaacatgcattggataaaaacaggccgttaggggaacaaaatttagtcgactgggcgagatttttactcatcagcaaatgcaagatc |
406 |
Q |
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| T |
30412118 |
aattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttggttgaatgggccaagccattactcaacaacaaacataaaatc |
30412217 |
T |
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| Q |
407 |
tctcaagccatggatgattatatagaaggtgaatattcgtcgtcggaagcaatgaaagtagctcacattgtgattcaatgtctgtcggaaagaccaaaat |
506 |
Q |
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| T |
30412218 |
tctcaagttatggatgttcgtatagaaggtgaatactcatcgcgtgatgcaatgaaattagctcatattataattcaatgtctgtctgaaaaaccagaat |
30412317 |
T |
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| Q |
507 |
atagaccaagcatagaaaagattgtgaggtcattggaaccacttcagaattctaatgacacaattagtggtgtggagagctcttaatctca |
597 |
Q |
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| T |
30412318 |
atagaccaaaaatacaagagattgtgagatcactggagcaacttcagcattccgatgacacagtaggtggagtacggagctcttaatctca |
30412408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 566
Target Start/End: Original strand, 30423208 - 30423531
Alignment:
| Q |
243 |
ttttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattggaaatcacgttaggcaaacatgcattggataaaaacag |
342 |
Q |
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|||||||||||||||| || || |||||||| ||||| |||||||||||||||||||| | ||||| | || |||||| | || ||||||||||||| | |
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| T |
30423208 |
ttttttgtgaaggtcacctaactaaaaagagcgatgtctacagtttcggggttgttctcctagaaattatgtcaggcaagcgtgtattggataaaaaccg |
30423307 |
T |
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| Q |
343 |
gccgttaggggaacaaaatttagtcgactgggcgagatttttactcatcagcaaatgcaagatctctcaagccatggatgattatatagaaggtgaatat |
442 |
Q |
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| T |
30423308 |
accgtctggagagcatgatttagttgcatgggccaagccattactcatgagcaaacgtaagatttctcaagttatggatgctcgtatagaaggccaatac |
30423407 |
T |
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| Q |
443 |
tcgtcgtcggaagcaatgaaagtagctcacattgtgattcaatgtctgtcggaaagaccaaaatatagaccaagcatagaaaagattgtgaggtcattgg |
542 |
Q |
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| T |
30423408 |
tcatcgcgtgaagcaattaaagtagctcatgttgcaattcgatgtctgtcggcagaacaaaaatatagaccaaacattgacgaggtggtgagatcgttgg |
30423507 |
T |
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| Q |
543 |
aaccacttcagaattctaatgaca |
566 |
Q |
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||| ||||||| |||| ||||||| |
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| T |
30423508 |
aacaacttcaggattccaatgaca |
30423531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 30409565 - 30409667
Alignment:
| Q |
243 |
ttttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattggaaatcacgttaggcaaacatgcattggataaaaacag |
342 |
Q |
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| T |
30409565 |
ttttttgtgaaggtcacctaactaaagagagtgatttatacaattttggggttgttctcttggaaattatgtcaggcaaacatgcattagataacaacag |
30409664 |
T |
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| Q |
343 |
gcc |
345 |
Q |
| |
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||| |
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| T |
30409665 |
gcc |
30409667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 30405448 - 30405556
Alignment:
| Q |
237 |
attgtattttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattggaaatcacgttaggcaaacatgcattggataa |
336 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||||||| | || || |||| |||||||||| | |
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| T |
30405448 |
attgtcttttttgtgaaggtcacttgaccaaaaagagtgatgtatacggttttggggttgttctcctggaaattatgtcgggaaaacgtgcattggatta |
30405547 |
T |
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| Q |
337 |
aaacaggcc |
345 |
Q |
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| T |
30405548 |
taacaggcc |
30405556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 30402368 - 30402459
Alignment:
| Q |
243 |
ttttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattggaaatcacgttaggcaaacatgcattggat |
334 |
Q |
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| T |
30402368 |
ttttttgtgaaggccacttgaccaaaaagagtgatatatacggttttggggttcttctcctggaaattatgtcaggaaaacgtgcatgggat |
30402459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 34150918 - 34150972
Alignment:
| Q |
243 |
ttttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgt |
297 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
34150918 |
ttttttgtacaggtcatttgaccaaaaagagtgatgtatacagtttcggcgttgt |
34150972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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