View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791-INSERTION-8 (Length: 687)

Name: NF0791-INSERTION-8
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791-INSERTION-8
NF0791-INSERTION-8
[»] chr1 (1 HSPs)
chr1 (8-687)||(5605245-5605924)


Alignment Details
Target: chr1 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 8 - 687
Target Start/End: Original strand, 5605245 - 5605924
Alignment:
Q  8 gaaatatccatggttgttcgattaagattaaacgatttaaaagatgtatattttaattttgttttataattcaaaattttgagtttaaatctcaactatc 107  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5605245 gaaatatcaatggttgttcgattcagattaaacgatttaaaagatgcatattttaattttgttttataattcaaaattttgagtttaaatctcaactatc 5605344  T
Q  108 caatttggatcgaatagttaccaatatttcaactacttgaatgtggaaaaatccccattgcaccctcctttttactatatcactctctccctagccactc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5605345 caatttggatcgaatagttaccaatatttcaactacttgaatgtggaaaaatccccattgcaccctcctttttactatatcactctctccctagccactc 5605444  T
Q  208 tcacttttaatcataatcattattgtaattattaataatggtgtaattagaaccacttggactataactcaattctccaatagcgttgtcttattaactc 307  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5605445 tcacttttaatcataataattattgtaattattaataatggtgtaattagaaccacttggactataactcaattctccaatagcgttgtcttattaactt 5605544  T
Q  308 tcattcattcatttcaactacatattttttcatagaaaaggaatgattttgtagcataataatcaaaatgggtccaacccatcacaaatcaataaaaggt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5605545 tcattcattcatttcaactacatattttttcatagaaaaggaatgattttgtagcataataatcaaaatgggtccaacccatcacaaatcaataaaaggt 5605644  T
Q  408 aatttaattatgtgatttgcctcaatatggctctatgctatatatccatttttggataaaattacaatatacatatacctacaaattatgtatcttcttc 507  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5605645 aatttaattatgtgattttcctcaatatggctctattctatatatccatttttggataaaattgcaatatacatatacctacaaattatgtatcttcttc 5605744  T
Q  508 ctcttgctttggaccctgtatcttaaagcatgtagttgaagacatgacatgtgaagcagtggaggcttttatcattattcattagcatgtgtcaatgtgc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5605745 ctcttgctttggaccctgtatcttaaagcatgtagttgaagacatgacatgtgcagcagtggaggcttttatcattattcattagcatgtgtcaatgtgc 5605844  T
Q  608 tgttgaaggcatattgctaggtagataaacacatagaggtaggaatagtagcttttgggacaataagtaggggcatatga 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5605845 tgttgaaggcatattgctaggtagataaacacatagaggtaggaatagtagcttttgggacaataagtaggggcatatga 5605924  T

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