View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_high_10 (Length: 541)

Name: NF0791_high_10
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_high_10
NF0791_high_10
[»] chr7 (5 HSPs)
chr7 (67-499)||(23186967-23187413)
chr7 (166-272)||(28733762-28733870)
chr7 (166-226)||(33887904-33887964)
chr7 (170-280)||(39316073-39316184)
chr7 (167-227)||(9097746-9097805)
[»] chr5 (7 HSPs)
chr5 (167-280)||(34032087-34032201)
chr5 (168-279)||(2816174-2816287)
chr5 (166-280)||(37885613-37885726)
chr5 (167-280)||(17098183-17098297)
chr5 (184-226)||(26407564-26407606)
chr5 (166-226)||(141866-141925)
chr5 (166-226)||(3758194-3758254)
[»] chr3 (6 HSPs)
chr3 (167-309)||(30082852-30082998)
chr3 (167-259)||(37708432-37708525)
chr3 (170-282)||(38457212-38457324)
chr3 (167-255)||(8703336-8703425)
chr3 (167-255)||(9055223-9055312)
chr3 (166-288)||(40392387-40392509)
[»] chr1 (5 HSPs)
chr1 (166-280)||(36621927-36622042)
chr1 (167-258)||(4521027-4521119)
chr1 (168-221)||(64883-64936)
chr1 (166-227)||(9221274-9221335)
chr1 (166-226)||(8836543-8836603)
[»] scaffold0009 (1 HSPs)
scaffold0009 (166-272)||(189063-189170)
[»] chr8 (9 HSPs)
chr8 (141-272)||(22209375-22209507)
chr8 (167-226)||(20279607-20279666)
chr8 (167-226)||(21066234-21066293)
chr8 (166-226)||(27776541-27776601)
chr8 (176-226)||(1576414-1576464)
chr8 (167-220)||(8108305-8108359)
chr8 (170-251)||(21307619-21307701)
chr8 (166-227)||(12782771-12782832)
chr8 (141-197)||(40298850-40298906)
[»] scaffold0192 (1 HSPs)
scaffold0192 (143-272)||(15900-16030)
[»] chr2 (7 HSPs)
chr2 (166-220)||(16717603-16717657)
chr2 (168-220)||(37617447-37617499)
chr2 (172-226)||(35312103-35312157)
chr2 (166-226)||(33275945-33276005)
chr2 (167-205)||(3882611-3882649)
chr2 (185-280)||(35477685-35477782)
chr2 (167-227)||(8964387-8964447)
[»] chr6 (2 HSPs)
chr6 (141-258)||(30509285-30509403)
chr6 (170-226)||(34921565-34921621)
[»] chr4 (9 HSPs)
chr4 (167-251)||(24369402-24369487)
chr4 (166-261)||(44670846-44670942)
chr4 (168-220)||(50086466-50086518)
chr4 (166-280)||(54700841-54700954)
chr4 (172-261)||(10095656-10095746)
chr4 (166-220)||(29352463-29352517)
chr4 (167-227)||(39274956-39275016)
chr4 (166-226)||(41956482-41956542)
chr4 (166-281)||(50774955-50775071)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 67 - 499
Target Start/End: Complemental strand, 23187413 - 23186967
Alignment:
Q  67 ctaattttatgctgttggcttttgagtataatctacctgtagctttaccctttatat------acacatgtataatttatggtcttattaaccagtgtct 160  Q
    |||||| |||||||||||||||||||| | || |||||||||||||||| |||||||      |||| |||||||||||||||||||||||| ||||||     
T  23187413 ctaattatatgctgttggcttttgagtcttatttacctgtagctttaccttttatatttatatacacctgtataatttatggtcttattaacgagtgtcc 23187314  T
Q  161 ctaatacactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaacaatgattacatgtatttttaaaaatatt 260  Q
    | ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23187313 ccaatgcactctttaagcattttaaaataagcaattactctttaataaaattaaatatttcaatttctaaacaataattacatgtatttttaaaaatatt 23187214  T
Q  261 tattatttatggatcttaaaagggtctcgaaggtactctttaacatttctctataatttataatttatagtcaacctcctatttttcttcggtcaatcga 360  Q
    || ||||||||||||||||||| |||||||||| |||| |||||||||| |  |||||||||||||||||||||||||||||||||||||  ||||||||    
T  23187213 tactatttatggatcttaaaagtgtctcgaaggcactcgttaacatttcccagtaatttataatttatagtcaacctcctatttttcttcaatcaatcga 23187114  T
Q  361 ccttgtttccacgaaaagttttatgaacttctgcgcaagaacattggaaactacgttcgtgtgatatgacg--------taataataatcaatgattgat 452  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  23187113 ccttgtttccacgaaaagttttatgaagttctgcgcaagaacattggaaactacgttcgtgtgatatgacgtaatgacgtaataataatcaatgattgat 23187014  T
Q  453 agagaattttatcgacactctctcgaagacaataatagtcaacgacc 499  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23187013 agagaattttatcgacaatctctcgaagacaataatagtcaacgacc 23186967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 28733870 - 28733762
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaa-ttaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttat 263  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||| ||||||||||  | ||| |  |||||||||||||| ||||||||||||||||      
T  28733870 acactctttaagcattttaaaataaacaattattctttaaaaaaagttaaatattttgaattccatgacaatgattacatgcatttttaaaaatattttc 28733771  T
Q  264 tatttatgg 272  Q
    |||||||||    
T  28733770 tatttatgg 28733762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 33887964 - 33887904
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    ||||||||||||||||| |||||||| ||||| ||||||| ||| | ||||||||||||||    
T  33887964 acactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattt 33887904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 39316073 - 39316184
Alignment:
Q  170 tctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttattattt 268  Q
    |||||||||||||||||||||  ||||| |||||| | || | ||||||||| ||||  || | ||| | |||||  ||||||||||||||||||| |||    
T  39316073 tctttaagcattctaaaataagtaattattctttattgaagtcaaatatttcgattttcaagataataagtacatacatttttaaaaatatttattgttt 39316172  T
Q  269 atggatcttaaa 280  Q
     ||| |||||||    
T  39316173 gtgggtcttaaa 39316184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 9097805 - 9097746
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 227  Q
    |||||||||||||| |||| ||||||||||| | || || ||||| |||||||||||||||    
T  9097805 cactctttaagcatactaatataaacaatta-ttttaaaaaaaatcaaatatttcaatttc 9097746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 34032201 - 34032087
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatta 265  Q
    ||||||||||||||||||||||||  ||||| ||||||| ||| ||||||||||||||||| ||  ||||||||||||| ||||||||||||| ||| ||    
T  34032201 cactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaatttcaaaggcaatgattacatgcatttttaaaaatacttacta 34032102  T
Q  266 tttatggatcttaaa 280  Q
     |||||| |||||||    
T  34032101 cttatgggtcttaaa 34032087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 2816174 - 2816287
Alignment:
Q  168 actctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaa-tttctaaacaatgattacatgta-tttttaaaaatatttatta 265  Q
    ||||||||||||||  |||| || |||||| ||||||| ||||| ||||||||||| |||| | |||||||||||||| | |||||  ||||||||| ||    
T  2816174 actctttaagcatttcaaaagaagcaattattctttaaaaaaatcaaatatttcaattttcaagacaatgattacatgcatttttttgaaatatttacta 2816273  T
Q  266 tttatggatcttaa 279  Q
    ||||||| ||||||    
T  2816274 tttatgggtcttaa 2816287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 37885613 - 37885726
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatt 264  Q
    ||||| ||||| |||| |||||||||||||||   ||||| |||||||||||||||||||| ||| | | | |||||| | ||||||| ||||| |||||    
T  37885613 acactttttaaacattttaaaataaacaattaggttttaa-aaaattaaatatttcaatttttaatatattaattacacgcatttttataaatacttatt 37885711  T
Q  265 atttatggatcttaaa 280  Q
    |||||| |||||||||    
T  37885712 atttat-gatcttaaa 37885726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 17098297 - 17098183
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatta 265  Q
    |||||||||| |||   ||||||| |||||| | ||||| ||| | ||||||||| ||||| || |||||||||||||  |||||||||||||| || ||    
T  17098297 cactctttaaacatcacaaaataagcaattattatttaaaaaagtcaaatatttcgatttccaagacaatgattacattcatttttaaaaatatctacta 17098198  T
Q  266 tttatggatcttaaa 280  Q
    ||||||  |||||||    
T  17098197 tttatgagtcttaaa 17098183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 26407606 - 26407564
Alignment:
Q  184 aaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  26407606 aaaataaaaaattattctttaataaaattaaatatttcaattt 26407564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 141866 - 141925
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    ||||||||||||||| | |||||||||||||| ||||| | |||| | |||||||||||||    
T  141866 acactctttaagcataccaaaataaacaattattctttta-aaaagtcaatatttcaattt 141925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 3758194 - 3758254
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    ||||||||||| |||| |||||||| |||||| ||||||| ||| | ||||||||| ||||    
T  3758194 acactctttaaacattttaaaataatcaattattctttaaaaaagtcaaatatttcgattt 3758254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 30082852 - 30082998
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaa--ttaaatatttcaatttctaaa-caatgattacatgtatttttaaaaatatttat 263  Q
    |||||||||||||||||||||||| || ||| ||||||| ||||  | ||||||||||||| |||||  |||||||||||| ||||||||||||| |||     
T  30082852 cactctttaagcattctaaaataagcagttattctttaaaaaaaagtcaaatatttcaattcctaaagaaatgattacatggatttttaaaaatacttac 30082951  T
Q  264 tatttatggatcttaaa-agggtctcgaaggtactctttaacatttc 309  Q
    ||||||| | ||||||| || ||| |||||  |||| ||||||||||    
T  30082952 tatttataggtcttaaagagtgtcccgaagacactcgttaacatttc 30082998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 37708432 - 37708525
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaa-tttctaaacaatgattacatgtatttttaaaaatat 259  Q
    ||||||||||||||  |||||||| |||||| ||||||| ||| ||||| ||||||| |||| |  || |||||||||||||||||| ||||||    
T  37708432 cactctttaagcatattaaaataagcaattagtctttaaaaaagttaaacatttcaattttcaatgcactgattacatgtatttttataaatat 37708525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 38457324 - 38457212
Alignment:
Q  170 tctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtatttttaaaaatatttattattt 268  Q
    ||||||||||||||| ||||| |||||| ||||||| ||||||||||||||  ||||  ||  || ||||||||||||||||   ||||| ||| |||||    
T  38457324 tctttaagcattctataataagcaattattctttaa-aaaattaaatattttgattttcaatgcattgattacatgtattttcgtaaatacttactattt 38457226  T
Q  269 atggatcttaaaag 282  Q
    |||| |||||||||    
T  38457225 atggttcttaaaag 38457212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 8703425 - 8703336
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaa 255  Q
    ||||| |||||||||||||||||| |||||  | ||||| ||| ||||||||||  ||||||||  |||| |||||||| ||||||||||    
T  8703425 cactcgttaagcattctaaaataagcaattgttatttaaaaaagttaaatattttgatttctaaggcaatcattacatgcatttttaaaa 8703336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 9055312 - 9055223
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaa 255  Q
    ||||| |||||||||||||||||| |||||  | ||||| ||| ||||||||||  ||||||||  |||| |||||||| ||||||||||    
T  9055312 cactcgttaagcattctaaaataagcaattgttatttaaaaaagttaaatattttgatttctaaggcaatcattacatgcatttttaaaa 9055223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 40392387 - 40392509
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatt 264  Q
    |||||||||||| ||| ||||| ||  ||||||||||||| ||| ||||||||||  ||||||||  || ||||||||| |||||| | ||||||||| |    
T  40392387 acactctttaagtattttaaaa-aagtaattactctttaaaaaagttaaatatttttatttctaatgcattgattacatatattttcataaatatttact 40392485  T
Q  265 atttatggatcttaaaagggtctc 288  Q
    | |||||   |||||||| |||||    
T  40392486 acttatgttccttaaaagtgtctc 40392509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 36621927 - 36622042
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtatttttaaaaatatttatt 264  Q
    ||||||||||| ||||  ||||||| |||||| ||||||| ||| ||||||||||  ||||| ||| ||||||||||||| ||||||||||||| |||||    
T  36621927 acactctttaaacatttcaaaataagcaattattctttaaaaaagttaaatattttgatttccaaaacaatgattacatgcatttttaaaaatacttatt 36622026  T
Q  265 atttatggatcttaaa 280  Q
    | |||||| |||||||    
T  36622027 acttatgggtcttaaa 36622042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 4521119 - 4521027
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaata 258  Q
    |||||||||||||| |||||| || | |||| ||||||| ||| ||||| ||||||||||| ||  || |||||||||||||||||| |||||    
T  4521119 cactctttaagcatactaaaacaagcgattattctttaaaaaagttaaacatttcaatttccaatgcattgattacatgtatttttataaata 4521027  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 64936 - 64883
Alignment:
Q  168 actctttaagcattctaaaataaacaattactctttaataaaattaaatatttc 221  Q
    ||||||||| |||||||||||||||||||| ||||||| ||  |||||||||||    
T  64936 actctttaaacattctaaaataaacaattattctttaaaaacgttaaatatttc 64883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 9221335 - 9221274
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 227  Q
    |||||||||||  ||| ||||||||||||||| ||||||  ||| ||||||||||| |||||    
T  9221335 acactctttaactattttaaaataaacaattattctttagaaaagttaaatatttcgatttc 9221274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 8836603 - 8836543
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    ||||||||||||||||   ||||||||||||| ||||||| ||| | ||||||||| ||||    
T  8836603 acactctttaagcatttcgaaataaacaattattctttaaaaaagtcaaatatttcgattt 8836543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 189063 - 189170
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatt 264  Q
    |||||||||||||||| |||||||| |||||| ||||||| ||| ||||||||||| |||||||| ||| | ||||||  |||||| | ||||| |||||    
T  189063 acactctttaagcattttaaaataagcaattattctttaaaaaagttaaatatttctatttctaatacattaattacacatattttcataaatacttatt 189162  T
Q  265 atttatgg 272  Q
    ||||||||    
T  189163 atttatgg 189170  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 272
Target Start/End: Original strand, 22209375 - 22209507
Alignment:
Q  141 ggtcttattaaccagtgtctctaatacactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgatt 239  Q
    |||||||||||| ||||||||    |||||||||||||||| ||||| || |||||| || |||| ||| ||||||||||  ||||| || ||| |||||    
T  22209375 ggtcttattaacaagtgtctccgggacactctttaagcattttaaaagaagcaattattccttaaaaaagttaaatattttgatttccaagacattgatt 22209474  T
Q  240 acatgtatttttaaaaatatttattatttatgg 272  Q
    |||| |||||| | ||||| ||| |||||||||    
T  22209475 acatatattttcataaatacttactatttatgg 22209507  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 20279666 - 20279607
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    |||||||||||||||||||||||| |||||| ||||| | ||| | ||||||||||||||    
T  20279666 cactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattt 20279607  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 21066293 - 21066234
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    |||||||||||||||||||||||| |||||| ||||| | ||| | ||||||||||||||    
T  21066293 cactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattt 21066234  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 27776541 - 27776601
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    ||||||||||| |||| |||||||||| |||| | ||||| |||||||||||||| |||||    
T  27776541 acactctttaaacattttaaaataaacgattattatttaaaaaaattaaatattttaattt 27776601  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 1576464 - 1576414
Alignment:
Q  176 agcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    |||||||||||||||||||||| ||| ||| |||| |||||||||| ||||    
T  1576464 agcattctaaaataaacaattattctgtaaaaaaaataaatatttcgattt 1576414  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 8108359 - 8108305
Alignment:
Q  167 cactctttaagcattctaaaataaacaa-ttactctttaataaaattaaatattt 220  Q
    |||||||||||||||||||||||||||| ||| || |||| ||| ||||||||||    
T  8108359 cactctttaagcattctaaaataaacaagttattcattaaaaaagttaaatattt 8108305  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 21307619 - 21307701
Alignment:
Q  170 tctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtattttt 251  Q
    ||||||| |||||||||||||||||||  |||| || ||| | ||||||||  ||||| ||| || |||||||||||||||||    
T  21307619 tctttaaacattctaaaataaacaatttttcttaaaaaaattaaaatatttagatttcaaaatcattgattacatgtattttt 21307701  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 12782771 - 12782832
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 227  Q
    ||||||||||||||| ||||||||  |||||| ||||||| ||| || |||||||| |||||    
T  12782771 acactctttaagcatactaaaatatgcaattattctttaaaaaagttgaatatttcgatttc 12782832  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 40298850 - 40298906
Alignment:
Q  141 ggtcttattaaccagtgtctctaatacactctttaagcattctaaaataaacaatta 197  Q
    |||||| ||||| |||||| |||  |||||||||||||||| |||||||| ||||||    
T  40298850 ggtcttgttaacgagtgtccctatgacactctttaagcattataaaataagcaatta 40298906  T

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Target: scaffold0192 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 16030 - 15900
Alignment:
Q  143 tcttattaaccagtgtctctaatacactctttaagcattctaaaataaacaattactctttaataaaattaaatatttc-aatttctaaacaatgattac 241  Q
    |||| ||||| ||||| |||| |||||||||||| |||| |||||| || ||||| |||| || ||  ||||||||||| | |||| ||||| ||||| |    
T  16030 tcttgttaacgagtgtttctagtacactctttaaacattttaaaattaataattattcttgaaaaatgttaaatatttcgattttcaaaacattgattgc 15931  T
Q  242 atgtatttttaaaaatatttattatttatgg 272  Q
    ||   |||||||| |||||||||||||||||    
T  15930 ataattttttaaatatatttattatttatgg 15900  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 16717603 - 16717657
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatattt 220  Q
    |||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||    
T  16717603 acactctttaagcattctaaaataagtaattattctttaaaaaaattaaatattt 16717657  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 37617499 - 37617447
Alignment:
Q  168 actctttaagcattctaaaataaacaattactctttaataaaattaaatattt 220  Q
    |||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||    
T  37617499 actctttaagcattttaaaataaataattattctttaaaaaaattaaatattt 37617447  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 35312103 - 35312157
Alignment:
Q  172 tttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    ||||||||||||||||||||||| |  ||||||| |||||||||||||| |||||    
T  35312103 tttaagcattctaaaataaacaaattttctttaaaaaaattaaatattttaattt 35312157  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 33276005 - 33275945
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    |||||||||||||||||||||| ||  ||||| | ||||| ||| ||||||||||||||||    
T  33276005 acactctttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattt 33275945  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 3882611 - 3882649
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaa 205  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  3882611 cactctttaagcattctaaaataagcaattattctttaa 3882649  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 35477782 - 35477685
Alignment:
Q  185 aaataaacaattactctttaataaaatt-aaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttattatttatggatcttaaa 280  Q
    |||||| |||||| ||||||| |||| | ||||||||| ||||| || |||||||| ||||| ||||||||||||| ||| || |||| | |||||||    
T  35477782 aaataagcaattattctttaaaaaaagtcaaatatttcgatttccaagacaatgatgacatgcatttttaaaaatacttactacttataggtcttaaa 35477685  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 8964387 - 8964447
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 227  Q
    |||| ||||||||||||||| |||  ||||| ||||||| ||| | |||||||||||||||    
T  8964387 cactgtttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttc 8964447  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 30509285 - 30509403
Alignment:
Q  141 ggtcttattaaccagtgtctctaatacactctttaagcattctaaaataaacaattactctttaataaaattaaatatttc-aatttctaaacaatgatt 239  Q
    |||||| ||||| ||||||||    ||||||||||||||| | ||||||| |||||| ||||||| ||||| ||| ||||| | |||| |  || |||||    
T  30509285 ggtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgatt 30509384  T
Q  240 acatgtatttttaaaaata 258  Q
    ||||||||||||| |||||    
T  30509385 acatgtatttttataaata 30509403  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 34921565 - 34921621
Alignment:
Q  170 tctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    |||||| |||||||||||||| |||||| ||||||| ||| |||||||||| |||||    
T  34921565 tctttaggcattctaaaataatcaattattctttaaaaaagttaaatattttaattt 34921621  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 24369402 - 24369487
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtattttt 251  Q
    |||||||||| ||| |||||||||||||||| ||||||  ||| | ||| ||||||||||| ||| || |||||| ||||||||||    
T  24369402 cactctttaaacatactaaaataaacaattattctttataaaagtcaaacatttcaatttccaaagcactgattatatgtattttt 24369487  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 44670942 - 44670846
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatattt 261  Q
    |||| |||||||||| |||||| ||| |||||   ||||| ||||||||||||||| ||||| ||  |||| ||||||| |||||||| ||||||||    
T  44670942 acacactttaagcatactaaaacaaataattatcttttaaaaaaattaaatatttcgatttccaatgcaataattacatatatttttataaatattt 44670846  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 50086518 - 50086466
Alignment:
Q  168 actctttaagcattctaaaataaacaattactctttaataaaattaaatattt 220  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||| ||||||||    
T  50086518 actctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattt 50086466  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 54700954 - 54700841
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaaa-caatgattacatgtatttttaaaaatatttatt 264  Q
    |||||||||||||||| ||||||||  ||||| |||| ||  || | ||||||||  ||||| ||  ||||||||||||| ||||||||||||| ||| |    
T  54700954 acactctttaagcattttaaaataagtaattattcttaaa--aagtcaaatattttgatttccaaggcaatgattacatgcatttttaaaaatacttact 54700857  T
Q  265 atttatggatcttaaa 280  Q
    | |||||| |||||||    
T  54700856 acttatgggtcttaaa 54700841  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 10095746 - 10095656
Alignment:
Q  172 tttaagcattctaaaataaacaattactctttaataaaattaaatatttc-aatttctaaacaatgattacatgtatttttaaaaatattt 261  Q
    ||||| ||| ||||||||||||||||   ||||| ||||| ||||||||| | |||| |  ||||||||||||| ||||||| ||||||||    
T  10095746 tttaaacatactaaaataaacaattatcttttaaaaaaatcaaatatttcgattttcaatgcaatgattacatgcatttttataaatattt 10095656  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 29352463 - 29352517
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatattt 220  Q
    ||||||||||| ||||||||||||| |||||| ||||| | ||||| ||||||||    
T  29352463 acactctttaatcattctaaaataagcaattattcttttaaaaaataaaatattt 29352517  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 39274956 - 39275016
Alignment:
Q  167 cactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttc 227  Q
    |||| ||||||||||| ||| |||||||||| | ||| | ||||| |||||||||||||||    
T  39274956 cactatttaagcattcaaaagtaaacaattatttttttaaaaaatcaaatatttcaatttc 39275016  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 41956542 - 41956482
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaattt 226  Q
    |||||||||||||| || |||||||  || || ||||||| ||| ||||||||||||||||    
T  41956542 acactctttaagcaatccaaaataagaaagtattctttaagaaatttaaatatttcaattt 41956482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 281
Target Start/End: Original strand, 50774955 - 50775071
Alignment:
Q  166 acactctttaagcattctaaaataaacaattactctttaataaaattaaatatttcaatttctaa-acaatgattacatgtatttttaaaaatatttatt 264  Q
    ||||| |||||| ||||||||||||  ||||| ||||||| ||| ||||||||||  ||||  || | | ||||||||  |||||| | |||||||||||    
T  50774955 acactttttaagtattctaaaataagtaattattctttaaaaaagttaaatattttgattttcaacatattgattacacatattttcataaatatttatt 50775054  T
Q  265 atttatggatcttaaaa 281  Q
    | |||||  ||||||||    
T  50775055 acttatgattcttaaaa 50775071  T

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