View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_12 (Length: 511)
Name: NF0791_high_12
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 381 - 498
Target Start/End: Original strand, 19788906 - 19789023
Alignment:
| Q |
381 |
caagcaactgaggataaccatccaatgttgatgtcccgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagcacagaagcgttta |
480 |
Q |
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| T |
19788906 |
caagcaactgaggataaccatccaatgttgttgtcctgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagcacagaagcgttta |
19789005 |
T |
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| Q |
481 |
agttcccatattgtccct |
498 |
Q |
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| T |
19789006 |
agttcccatattgtccct |
19789023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 257 - 382
Target Start/End: Original strand, 19788745 - 19788870
Alignment:
| Q |
257 |
tgactgtggccacagggatcctgtttttgccagctctccttaaatttatgaatatcatgtcaggaaagcagaaatggcagtcatgaaccttttaacagtg |
356 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19788745 |
tgactgtggcagcaggggtcctgtttttgccagctctccttaaatttatgaatatcatgtcaggaaagcagaaatggcagtcatgagccttttaacagta |
19788844 |
T |
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| Q |
357 |
gtaattgagactgacaaagaattcca |
382 |
Q |
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| T |
19788845 |
gcaattgagactgacaaagaattcca |
19788870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 19788302 - 19788465
Alignment:
| Q |
75 |
tcaccgggactattttgatgcaagggaccatttttt-aagtgcagttggagagcctgagtctgccgcaa-tatgaaatacccattcgtagaaatgtataa |
172 |
Q |
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| T |
19788302 |
tcaccaggaccattttgatgtaagggaccatttttttaagggcagttggagagcccgagtctgccgcaattatgaaatatccattcatagaaat------ |
19788395 |
T |
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| Q |
173 |
aatacttcaagccatgcagaatcagaacctggaggacccagcccttgattgggctgccactaattctgacacttgct |
249 |
Q |
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| T |
19788396 |
act--ttcaa---atg--gaatcagaacctggaggacccagccctcaattaggctgccgctaattctgacacttgct |
19788465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 381 - 498
Target Start/End: Original strand, 28173292 - 28173409
Alignment:
| Q |
381 |
caagcaactgaggataaccatccaatgttgatgtcccgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagcacagaagcgttta |
480 |
Q |
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|||||||||||||| |||| |||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||| |||||| ||| |||| |
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| T |
28173292 |
caagcaactgaggagaaccctccaatgttgatgtcctgtggccatgtcctctgtaagcagtctatcttgaaaatgtccaagaatagcacaaaagtattta |
28173391 |
T |
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| Q |
481 |
agttcccatattgtccct |
498 |
Q |
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||| ||| |||||||||| |
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| T |
28173392 |
agtgcccgtattgtccct |
28173409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 28172687 - 28172830
Alignment:
| Q |
98 |
gggaccattttttaagtgcagttggagagcctgagtctgccgcaa-tatgaaatacccattcgtagaaatgtataaaatacttcaagccatgcagaatca |
196 |
Q |
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||||||||||| | |||||||| || |||||||| ||||| |||| |||||||| |||||| | || |||||| ||||||| |||||||||||||||| |
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| T |
28172687 |
gggaccattttcttagtgcagtcggtgagcctgaatctgctgcaagtatgaaatctccattcttggagatgtatcaaatactcgaagccatgcagaatca |
28172786 |
T |
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| Q |
197 |
gaacctggaggacccagcccttgattgggctgccactaattctgaca |
243 |
Q |
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| T |
28172787 |
gaacctggag---ccagccctcaactgggctgcgactaattctgaca |
28172830 |
T |
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