View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_18 (Length: 477)
Name: NF0791_high_18
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_18 |
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| [»] scaffold0649 (1 HSPs) |
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Alignment Details
Target: scaffold0649 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 30 - 467
Target Start/End: Original strand, 6652 - 7089
Alignment:
| Q |
30 |
gatttttgttttgaaactctagtattctctttaagtacggttgttgaaatcttccaaatcatgtcgtaaactgactacaatctgctgttcagaattcaga |
129 |
Q |
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| T |
6652 |
gatttttgttttgaaattctagtattctctttaagtatggttgttgaaatcttcccaatcatgtcgtaaactgactaaaatctgctgttcagaattcaga |
6751 |
T |
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| Q |
130 |
ctaggttgtaattaatttcgatgtatatatatagcaagccttttattttgagagcttacagtgtaaattcatcgaatttgttttgaggctcgttactcga |
229 |
Q |
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| T |
6752 |
ttaggttgtaattaatttcgatgtatatatatagcaagccttttattttgagagcttacagtgtaaattcatcgaatttgttttgaggctcgttactcga |
6851 |
T |
|
| Q |
230 |
aatagcatatattttgaggacttgttctgtaaattcaagaaagaattgaatgcaaaagtgtatttgttagtacttgttctttaaaaatactttttccata |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6852 |
aatagcatatattttgaggacttgttctgtaaattcaagaaagaattgaatgcaaaagtgtatttgttagtacttgttctctaaaaatactttttccata |
6951 |
T |
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| Q |
330 |
tcagtttgctagtacaaaatccttttttcttagacttaaaagtctatttgttaaaacttgagtctttaaacttgactcgtaccaatgaaacattgttgta |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6952 |
tcagtttgctagtacaaaatccttttttcttagacttaaaagtctatttgttaaaacttgagtctttaaacttgactcgtaccaatgaaacattgttgta |
7051 |
T |
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| Q |
430 |
gccattgcaatccatccatcatttgatagagcttcatc |
467 |
Q |
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| T |
7052 |
gccattgcaatccatccatcatttgatagagcttcatc |
7089 |
T |
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