View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_20 (Length: 469)
Name: NF0791_high_20
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_20 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 117 - 456
Target Start/End: Original strand, 14444 - 14783
Alignment:
| Q |
117 |
ctagatgaggagatccaaggcgaagatgatgatactaaacttatgcctacttttaaagtgattgcttctgaagacattgacattgatgaaatggggcaaa |
216 |
Q |
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| T |
14444 |
ctagatgaggagatccaaggcgaagatgatgatactaaacttatgcctacttttaaagtgattgcttctgaagacattgacattgatgaaatggggcaaa |
14543 |
T |
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| Q |
217 |
aatctttgtttattatattcttgacgaagataacacctaatagaagaatatggaacgtgctgcatatgggtggagactcaaagctgattaagaaaatttt |
316 |
Q |
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| T |
14544 |
aatctttgtttattatattcttgacgaatataacacctaatagaagaatatggaacgtgctgcatatgggtggagagtcaaagctgattaagaaaatttt |
14643 |
T |
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| Q |
317 |
atgtcccagtgtcgtggtaagattgatttgaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttattttgatattcattg |
416 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14644 |
atgtcccagtgttgtggtaagattgatttgaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttattttgatattcattg |
14743 |
T |
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| Q |
417 |
ttgattgtttgttttagttatttatagcactattgtagaa |
456 |
Q |
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| T |
14744 |
ttgattgtttgttttagttatttatagcactattgtagaa |
14783 |
T |
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