View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791_high_23 (Length: 451)
Name: NF0791_high_23
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 41348358 - 41348628
Alignment:
| Q |
19 |
gcagcaacacagagataactcatatataaagagaaaacagtcaactctttcttaattcatcatctatttttagttgttaaaatcaagtaannnnnnnngg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41348358 |
gcagcaacacagagataactcatatataaagagaaaacagtcaactctttcttaattcatcatctatttttagttgttaaaatcaagtaattttttttgg |
41348457 |
T |
|
| Q |
119 |
acgtgctaacttatgcctnnnnnnnnnnnnntaaacagatgaaatcttcgtgtacctatagaataagtatacaggtaaaatcagctctaatgaaagaaat |
218 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41348458 |
acgtgctaccttatgcctaaaaaaacaaaaataaacagatgaaatcttcgtgtacctatagaataagtatacaggtaaaatcagctctaatgaaagaaat |
41348557 |
T |
|
| Q |
219 |
tagaagccaataaaattctgttttattgcacttattttttatactatcggttagcttatctgtgttgtact |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41348558 |
tagaagccaataaaattctgttttattgcacttattttttatactatcggttagcatatctgtgttgtact |
41348628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 346 - 445
Target Start/End: Original strand, 41348686 - 41348785
Alignment:
| Q |
346 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaacatgacagaaatggaacatgctccgatgccaagtattcatctcac |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41348686 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaacatgacagaaatggaacatgctccgatgccaagtattcatatcac |
41348785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University