View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_25 (Length: 426)
Name: NF0791_high_25
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 159 - 408
Target Start/End: Original strand, 2893964 - 2894213
Alignment:
| Q |
159 |
gtgtttgtgaatcataagcagtaatattagttttctttaagttatgctattgagattgttgaatctggtgtcggtgtctgtgacggtgattcatacaccc |
258 |
Q |
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| T |
2893964 |
gtgtctgtgaattataagcagtaatattagttttctttaagttatgctattgagattgttgaatctggtgtcggtgtctgtgacggtgattcatacaccc |
2894063 |
T |
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| Q |
259 |
tatgaccactattataagcnnnnnnnnccattttcgcttataatagtggctgtgtatgaatcataagtagtaa-tttaatttattctttcgataagctat |
357 |
Q |
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| T |
2894064 |
tatgaccactattataagc-aaaaaaaccattttcgcttataatagtggccgtgtatgaatcataagtagtaattttaattttttctttctacaagctat |
2894162 |
T |
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| Q |
358 |
gctattgagattattgaatcagtgtttatgtcgtgtttggagttcgtgtct |
408 |
Q |
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| T |
2894163 |
gctattgagattattgaatcagtgtttatgtcgtgtttggtgttcgtgtct |
2894213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 2893828 - 2893938
Alignment:
| Q |
113 |
ttatcttattgagattattgaatcagtgctgacgtgttcggtacccgtgtttgtgaatcataagcagtaatattagtttt-ctttaagttatgctattga |
211 |
Q |
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| T |
2893828 |
ttatattattga-attattgaatcagtgctgacgtgttcggtgcccgtgtttgtgaatcataagtagtaattttagttttgctataacttatgctattga |
2893926 |
T |
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| Q |
212 |
gattgttgaatc |
223 |
Q |
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| T |
2893927 |
gattgttgaatc |
2893938 |
T |
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