View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791_high_31 (Length: 399)
Name: NF0791_high_31
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 358
Target Start/End: Original strand, 43976657 - 43976985
Alignment:
| Q |
30 |
cttttatccccttctccaatcaccatctcattcactctcaacctttcaagtaaagagtaacaagactttaccgaaaaacaagcttccacacccaagaatc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43976657 |
cttttatccccttctccaatcaccatctcattcactcgcaacctttcaagtaaagagtaacaagactttaccgataaacaagcttccacacccaagaatc |
43976756 |
T |
|
| Q |
130 |
acaatccccaatcacttcaaaagcgcctaaacaaagtaacaaatcattcacgagacctatttcccacacaaacaagttacgcctccacaacaaactccac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43976757 |
acaatccccaatcacttcaaaagcgcctaaacaaagtaacaaatcattcacgagacctatttcccacacaaacaagttacgcctccacaacaaactccac |
43976856 |
T |
|
| Q |
230 |
tctccaacaccatccctcgccgcccacatctcaccgacaagcgcctccttttgaattgacaaagaataaaggcgcgggaaagcgactcgaaggggatatt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43976857 |
tctccaacaccatccctcgccgcccacatctcaccgacaagcgcctccttttgaattgacaaagaataaaggcgcgggaaagcgactcgaaggggatctt |
43976956 |
T |
|
| Q |
330 |
ccatttatatacgacactcttgatgatgt |
358 |
Q |
| |
|
||||||||||||| |||||||||| |||| |
|
|
| T |
43976957 |
ccatttatatacggcactcttgattatgt |
43976985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 300
Target Start/End: Original strand, 18022080 - 18022324
Alignment:
| Q |
68 |
caacctttcaagtaaagagtaacaagactttaccgaaaaa------------caagcttccacacccaagaatcacaatccccaatcacttcaaaagcgc |
155 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| |||||||||| |||||| | |||||| | | |
|
|
| T |
18022080 |
caacctttcaagtaaagaataacatgactttaccgaaaaacaaccccgtcatcaagcttccacgcccaaaaatcacaatctccaatcccctcaaaaacac |
18022179 |
T |
|
| Q |
156 |
ctaaacaaagtaacaaatcattcacgagacctatttcccacacaaacaagttacgcctccacaacaaactccactctccaacaccatccctcgccgccca |
255 |
Q |
| |
|
||| | || |||||| ||||| || | |||| |||||| |||||||| | |||| ||||||| || |||||||| ||| ||| ||| | || |||| |
|
|
| T |
18022180 |
ctataaaagttaacaagtcattgacaaagcctacttcccatacaaacaaatgacgcatccacaagaatctccactcaccaccactctccaacacccccca |
18022279 |
T |
|
| Q |
256 |
catctcaccgacaagcgcctccttttgaattgacaaagaataaag |
300 |
Q |
| |
|
| |||| |||| |||||| |||||| |||||||||||||||| |
|
|
| T |
18022280 |
ccattcactaacaaacgcctctttttgagttgacaaagaataaag |
18022324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University