View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_34 (Length: 386)
Name: NF0791_high_34
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 7066873 - 7067248
Alignment:
| Q |
1 |
tcatcatcatgatcactggatgtagatatttgcttgtgtgcaaatttcatcatgttaatttgtgcatttaattctattgctttaagagaatgctcaacta |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7066873 |
tcataatcatgatcactggatgtagatatttgcttgtgtgcaaatttcatcatgttaatttgtgcattcaattctattgctttaagagaatgctcaacta |
7066972 |
T |
|
| Q |
101 |
gtttcacacaattccagaaagaaacctttgtcttgttttcctttaacacttgaagagcccttgaagggaaagttacattctctaatgatacacagccggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7066973 |
gtttcacacaattccagaaagaaacctttgtcttgttttcctttaacacttgaagagcccttgaagggaaagttacattctctaatgatacacagccggt |
7067072 |
T |
|
| Q |
201 |
ggcatctagagttatcaacgatgaaggaagctttggtagacgttgaagcttcctacaatgtcgtaattctagatgtctcagacttgaaaggcgcctgatg |
300 |
Q |
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| T |
7067073 |
ggcatctagagttatcaacgatgaaggaagctttggtagacgttgaagcttcctacaatgtcgtaattctagatgtctcagacttgaaaggcgcctgatg |
7067172 |
T |
|
| Q |
301 |
cttttaggcaagttctcgatgaaactgtgtggaagaagcaacttttcaagtttggtttgaagtcctattgatgatg |
376 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7067173 |
cttttaggcaagttctcaatgaaactgtgtgaaagaagcaacttttcaagtttggtttgaagtcctattgatgatg |
7067248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 374
Target Start/End: Complemental strand, 7025468 - 7025337
Alignment:
| Q |
243 |
ttgaagcttcctacaatgtcgtaattctagatgtctcagacttgaaaggcgcctgatgcttttaggcaagttctcgatgaaactgtgtggaagaagcaac |
342 |
Q |
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||||||||| || ||||| |||| |||||||||||||| |||| |||| | ||||||||||||||||| |||| ||| | ||||| ||| | ||| |
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| T |
7025468 |
ttgaagctttctgcaatggtgtaagtctagatgtctcagccttgtaaggttcttgatgcttttaggcaagctctcaatgtgagtgtgtcctagatgtaac |
7025369 |
T |
|
| Q |
343 |
ttttcaagtttggtttgaagtcctattgatga |
374 |
Q |
| |
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||||||||||||||||||||||| |||||||| |
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| T |
7025368 |
ttttcaagtttggtttgaagtccaattgatga |
7025337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 7032820 - 7032717
Alignment:
| Q |
271 |
agatgtctcagacttgaaaggcgcctgatgcttttaggcaagttctcgatgaaactgtgtggaagaagcaacttttcaagtttggtttgaagtcctattg |
370 |
Q |
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||||||||||| |||| ||| ||||||||||||||||||| ||| ||| | |||| | ||| |||||||||||||||||||||||||| |||| |
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| T |
7032820 |
agatgtctcagccttgtaagattcctgatgcttttaggcaagctctgaatgtgagtgtgcgctagatataacttttcaagtttggtttgaagtccaattg |
7032721 |
T |
|
| Q |
371 |
atga |
374 |
Q |
| |
|
|||| |
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|
| T |
7032720 |
atga |
7032717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 7073277 - 7073386
Alignment:
| Q |
34 |
ttgtgtgcaaatttcatcatgttaatttgtgcatttaattctattgctttaagagaatgctcaactagtttcacacaattccagaaagaaacctttgtct |
133 |
Q |
| |
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||||||| ||| ||||||||||||||||| ||||| || || || || || |||||| ||||| || ||| | ||||||||||| | ||||||| ||| |
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| T |
7073277 |
ttgtgtgaaaagttcatcatgttaatttgagcattcaactcaatagccttgagagaaggctcatttaatttaaggcaattccagaaggtaacctttttct |
7073376 |
T |
|
| Q |
134 |
tgttttcctt |
143 |
Q |
| |
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| |||||||| |
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|
| T |
7073377 |
ttttttcctt |
7073386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 7073583 - 7073619
Alignment:
| Q |
340 |
aacttttcaagtttggtttgaagtcctattgatgatg |
376 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||| |
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|
| T |
7073583 |
aacttttcaagtttggtttgtagtccaattgatgatg |
7073619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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