View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_high_38 (Length: 372)

Name: NF0791_high_38
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_high_38
NF0791_high_38
[»] scaffold0657 (1 HSPs)
scaffold0657 (9-343)||(6744-7069)


Alignment Details
Target: scaffold0657 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 6744 - 7069
Alignment:
Q  9 caacaaaatagaagaaagcacatttataacattgatagcaagtagcaacatttatttccagccacaactacatctctacaactcaaataacaagagagnn 108  Q
    ||||||||||||||||||||||||||||| |||||||||||       | ||||||| |||| ||||||||||| ||||||||||||||||||||||       
T  6744 caacaaaatagaagaaagcacatttataaaattgatagcaa-------cctttattttcagcaacaactacatccctacaactcaaataacaagaga--- 6833  T
Q  109 nnnnnnntacatgcccttatttgnnnnnnn--tatatctatataatagcaagctttaatgatggtcatgattaattattttaaacagaatccaatatact 206  Q
           ||||||||||||| |          |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6834 -aaaaaatacatgcccttatgtaaaaaaataatatatctaaataatagcaggctttaatgatggtcatgattaattattttaaacagaatccaaaatact 6932  T
Q  207 caccaaatcataaaccctttcattttcttctcccaaataaatctatacaaactttaacttaacaagaaatgggttaatttaataatcttaacttcataca 306  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6933 caccaaatcagaaaccctttcattttcttctcccaaataaatctatacagactttaacttaacaagaaatgggttaatttaataatcttaacttcataca 7032  T
Q  307 gttatttcattatctttcacaaaaacaaatccaaaac 343  Q
     ||||||||||||||||||||||||||||||||||||    
T  7033 attatttcattatctttcacaaaaacaaatccaaaac 7069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University