View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_41 (Length: 348)
Name: NF0791_high_41
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 7973458 - 7973140
Alignment:
| Q |
30 |
ttgatcatattgaacatgctgccatttcaaaaggacagtttgaaaacctattttgctgcaacccctgagtctccctaatttaatttgatcttggatcttg |
129 |
Q |
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| T |
7973458 |
ttgatcatattgaacatgctgccatctcaaaaggacagtttgaaaacctattttgctgcaacccctgagtctccctaatttaatttgatcttggatcttg |
7973359 |
T |
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| Q |
130 |
tgctatattattgtgtacagagaattcagagtactgctttcaaattcagtcctcttcttgtgaatttatgtcttctcattttcattgtcagagtaaccgt |
229 |
Q |
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| T |
7973358 |
tgctatattattgtgtacagagaattcagagtactgctttcaaattcagtcctcttcttgtgaatttatgtcttctcattttcattgtcagaataaccgt |
7973259 |
T |
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| Q |
230 |
aagattttggtaacatttcttcactttttcacctattttttggatagatgcttccccttccacttcttcccttcacaaagatgctatcaaatagggtaca |
329 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7973258 |
aagattttggtaacatttcttcactttttcaccttttttttggatagatgcttccccttccacttcttcccttcacaaagatgctatcaaatagggtaca |
7973159 |
T |
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| Q |
330 |
aagttgaagataaactaca |
348 |
Q |
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||||||||||||||||||| |
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| T |
7973158 |
aagttgaagataaactaca |
7973140 |
T |
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