View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_44 (Length: 333)
Name: NF0791_high_44
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 27 - 321
Target Start/End: Original strand, 6820193 - 6820489
Alignment:
| Q |
27 |
tcaatttcagccattttaagagctagccaacctctct--annnnnnnncttttcaagatgaatgtattaatgatatatatgcctagcaagttttgtgatt |
124 |
Q |
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| T |
6820193 |
tcaatttcagccattttaagagctagccaacctctctctattttttttcttttcaagatgaatgtattaatgatatatatgcctagcaagttttgtgatt |
6820292 |
T |
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| Q |
125 |
gaagagcttaattagtactcatatatagagagaaaactagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagctt |
224 |
Q |
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| T |
6820293 |
gaagagcttaattagttctcatatatagagagaaaactagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagctt |
6820392 |
T |
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| Q |
225 |
gtcggaagtaaaaagaatgtgtaaggattaactcactctaaagggtaaattaaataagtaatctaattatttggtaaataaatcggtcgttgatatt |
321 |
Q |
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| T |
6820393 |
gtcggaagtaaaaagaatgtgtaaggattaactcactctaaagggtaaattaaataagtaatctaaatatttggtaaataaatcggtagttgatatt |
6820489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 137 - 321
Target Start/End: Original strand, 6834766 - 6834945
Alignment:
| Q |
137 |
tagtactcatatatagagagaaaactagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagcttgtcggaagtaaa |
236 |
Q |
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| T |
6834766 |
tagtacttatatatagagacaaaactagtcactttgcttattattttattgtttcc--attcacaaaagtatatgttgaagtaaacttggaggaagtaaa |
6834863 |
T |
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| Q |
237 |
aagaatgtgtaaggatt-aactcactctaaagggtaaattaaataagtaatctaattatttggtaaataaatcggtcgttgatatt |
321 |
Q |
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| T |
6834864 |
aagaatatgtaaggattaaattcactttaaagggta----aaataagtaatataagtatttgacaaataaatctgtaggtgatatt |
6834945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 6813788 - 6813881
Alignment:
| Q |
162 |
tagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagcttgtcggaagtaaaaagaatgtgtaaggattaa |
255 |
Q |
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|||||||| || ||| |||| ||||||||||||||||||||| ||| |||| ||||||||| |||||||| ||| | |||||||||||| |
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| T |
6813788 |
tagtcactatgaatactattctattgtttccatattcacaaatttatgctttgatgtaagcttggaggaagtaagaagggtatgtaaggattaa |
6813881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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