View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_high_45 (Length: 333)

Name: NF0791_high_45
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_high_45
NF0791_high_45
[»] chr2 (3 HSPs)
chr2 (27-321)||(6820193-6820489)
chr2 (137-323)||(6834766-6834947)
chr2 (162-255)||(6813788-6813881)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 27 - 321
Target Start/End: Original strand, 6820193 - 6820489
Alignment:
Q  27 tcaatttcagccattttaagagctagccaacctctct--annnnnnnncttttcaagatgaatgtattaatgatatatatgcctagcaagttttgtgatt 124  Q
    |||||||||||||||||||||||||||||||||||||  |        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6820193 tcaatttcagccattttaagagctagccaacctctctctattttttttcttttcaagatgaatgtattaatgatatatatgcctagcaagttttgtgatt 6820292  T
Q  125 gaagagcttaattagtactcatatatagagagaaaactagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagctt 224  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6820293 gaagagcttaattagttctcatatatagagagaaaactagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagctt 6820392  T
Q  225 gtcggaagtaaaaagaatgtgtaaggattaactcactctaaagggtaaattaaataagtaatctaattatttggtaaataaatcggtcgttgatatt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  6820393 gtcggaagtaaaaagaatgtgtaaggattaactcactctaaagggtaaattaaataagtaatctaaatatttggtaaataaatcggtagttgatatt 6820489  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 6834766 - 6834947
Alignment:
Q  137 tagtactcatatatagagagaaaactagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagcttgtcggaagtaaa 236  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||| || ||||||||||| ||||  |||||||||    
T  6834766 tagtacttatatatagagacaaaactagtcactttgcttattattttattgtttcc--attcacaaaagtatatgttgaagtaaacttggaggaagtaaa 6834863  T
Q  237 aagaatgtgtaaggatt-aactcactctaaagggtaaattaaataagtaatctaattatttggtaaataaatcggtcgttgatattat 323  Q
    |||||| |||||||||| || ||||| |||||||||    ||||||||||| ||| ||||||  ||||||||| || | |||||||||    
T  6834864 aagaatatgtaaggattaaattcactttaaagggta----aaataagtaatataagtatttgacaaataaatctgtaggtgatattat 6834947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 6813788 - 6813881
Alignment:
Q  162 tagtcactttgcatattattttattgtttccatattcacaaaagaatgtgttgaagtaagcttgtcggaagtaaaaagaatgtgtaaggattaa 255  Q
    |||||||| || ||| |||| |||||||||||||||||||||   |||  |||| |||||||||  |||||||| |||  | ||||||||||||    
T  6813788 tagtcactatgaatactattctattgtttccatattcacaaatttatgctttgatgtaagcttggaggaagtaagaagggtatgtaaggattaa 6813881  T

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