View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_50 (Length: 325)
Name: NF0791_high_50
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 31761489 - 31761720
Alignment:
| Q |
94 |
atttgtaattaaactagaacagaaaattgttcactcaggtattcgaagccaaaacagtaacacacaatgattcatattttgtactcaatcattaacaaga |
193 |
Q |
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| T |
31761489 |
atttgtaattaaactagaacagaaaattgttcactcaggtattcgaagccaaaacagtaacacacaatgattcatattttgtactcaatcattaacaaga |
31761588 |
T |
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| Q |
194 |
atgaaacacataataaattgatatgttgtataccaaattagactattggtgatttcattgtacgaagtagatatagattttagttatactacactacaca |
293 |
Q |
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| T |
31761589 |
atgaaacacataataaattgatatgttgtataccaaattagactattggtgatttcattgtacgaagtagatatagattttagttatactacactacaca |
31761688 |
T |
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| Q |
294 |
tctgtttcaaactgcgacaggtttgccatttc |
325 |
Q |
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| T |
31761689 |
tctgtttcaaactgcggcaggtttgccatttc |
31761720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 36998348 - 36998286
Alignment:
| Q |
22 |
cactttgcttgaataaataaaaaattaggagcgtttaataattatacataaattatactcgct |
84 |
Q |
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| T |
36998348 |
cactttgcttgaataaataaaaaattaggagagtttaataattatacataaattatactcgct |
36998286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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