View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_6 (Length: 629)
Name: NF0791_high_6
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 212 - 602
Target Start/End: Complemental strand, 28243769 - 28243378
Alignment:
| Q |
212 |
gataaataggtaagatcaagtaaaatggagtaaatgatgaagaaatagttgaaattttctataaagttttagttgctattcttaaggttctaatttgatt |
311 |
Q |
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| T |
28243769 |
gataaataggtaagatcaagtaaaatggagtaaatgatgaagaaatagttgaaattttctataaagttttagttgctattcttaaggttctaatttgatt |
28243670 |
T |
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| Q |
312 |
gttttatgcaagcgacatcctttttgggaaacaaaggaaggtgatgcatccacaagattaattagataagggcattgaaacatgacaatagtctaaatgt |
411 |
Q |
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| T |
28243669 |
gttttatgcaagcgacatcctttttgggaaacaaaggaaggtgatgcatccacaagattaattagataagggcattgaaacatgacaatagtctaaatgt |
28243570 |
T |
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| Q |
412 |
gacgagtggagaaaaagaattttaattctgatctataagaataacagtgtacacgaaattgtgcaaattatagctgatcaaacttatgaatcatgctata |
511 |
Q |
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| T |
28243569 |
gacgagtggagaaaaagaattttaattctgatctataagaataacagtgtacacaaaattgtgcaaattatagctgatcaaacttatgaatcatgctata |
28243470 |
T |
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| Q |
512 |
aagttttgagaaagagtgatcaaacagagattaagaaaagagactcaagttattaataatcaatttaattttatg-tcggaagtcgaccatg |
602 |
Q |
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| T |
28243469 |
aagttttgagaaagagtgatctaacagagattaagaaaagagactcaagttactaataatcaatttaattttatgttgggaagtcgaccatg |
28243378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 28243965 - 28243866
Alignment:
| Q |
16 |
atcccacccgatctagccatctttgctacagatacattttaactgatactaaatcaaatcatgcacttcactctctctaaacaaagatcaccctgataac |
115 |
Q |
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| T |
28243965 |
atcccacccgatctagccatctttgctacagatacattttaactgataccaaatcaaatcattcacttcactctctctaaacaaagatcaccctggtaac |
28243866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 7789698 - 7789633
Alignment:
| Q |
522 |
aaagagtgatcaaacagagattaagaaaagagactcaagttattaataatcaatttaattttatgt |
587 |
Q |
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|||||||||| |||| ||||||| ||||||||||| ||||| | ||||||||||| |||||||| |
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| T |
7789698 |
aaagagtgattgaacaaagattaacaaaagagactcgagttactcataatcaatttggttttatgt |
7789633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 491 - 563
Target Start/End: Original strand, 48220808 - 48220880
Alignment:
| Q |
491 |
aaacttatgaatcatgctataaagttttgagaaagagtgatcaaacagagattaagaaaagagactcaagtta |
563 |
Q |
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| T |
48220808 |
aaacttatgaatcatatcatgaagttatgatagagagtgattaaacaaacattaagaaaagagactcgagtta |
48220880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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