View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_high_68 (Length: 270)
Name: NF0791_high_68
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 242675 - 242936
Alignment:
| Q |
1 |
ccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgcaatcacctcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |
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| T |
242675 |
ccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatctcaaccattgccgctatcacctcgt |
242774 |
T |
|
| Q |
101 |
ttggttatgtattcatcgcaattggtctttgtcttactgtccttatctcaggtagtttgttcatcacttttctcccttaaattcatagttttattttata |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
242775 |
ttggttatgtattcattgcaattggtctttgtcttactgtccttatctcaggtagtttgttgatcacttttctccctcaaattcatagttttattttata |
242874 |
T |
|
| Q |
201 |
tatgtctacttacaaaggcattttggctaagaacaggaaaaggagcatctaccagtataatc |
262 |
Q |
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| T |
242875 |
tatgtctacttacaaaggcattttggctaagaacaggaaaaggagcacctaccagcataatc |
242936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 222717 - 222544
Alignment:
| Q |
1 |
ccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgcaatcacctcat |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
222717 |
ccctatatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgctatcacctcgt |
222618 |
T |
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| Q |
101 |
ttggttatgtattcatcgcaattggtctttgtcttactgtccttatctcaggtagtttgttcatcacttttctc |
174 |
Q |
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| T |
222617 |
ttggttatgtattcattgcagttggcctttgtcttactgtccttatctcgggtaatttgttgatcacttttctc |
222544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 222399 - 222341
Alignment:
| Q |
194 |
ttttatatatgtctacttacaaaggcattttggctaagaacaggaaaaggagcatctac |
252 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |
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| T |
222399 |
ttttatatatgtctacttacaaatgcattttggctaagagcaggaaaaggggcatctac |
222341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 12030518 - 12030365
Alignment:
| Q |
1 |
ccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgcaatcacctcat |
100 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||| |||||| |||| ||||| ||||| | |
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| T |
12030518 |
ccctacatgattagttttgggacattgcagattttcttgtctcaaattccaaactttcatgaattgacatggatttcaaccgttgctgcaattacctcgt |
12030419 |
T |
|
| Q |
101 |
ttggttatgtattcatcgcaattggtctttgtcttactgtccttatctcaggta |
154 |
Q |
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|||||||||||||||| ||||||| ||||||| ||| || |||||||||||| |
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| T |
12030418 |
ttggttatgtattcattgcaattgctctttgttttaacgttattatctcaggta |
12030365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 51529337 - 51529445
Alignment:
| Q |
1 |
ccctacatgatcggttttgggatattgcagattttcttgtctcaaattcccaactttcacaaactgacatggatatcaaccattgccgcaatcacctcat |
100 |
Q |
| |
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||||||||| ||||||||||||| || |||||||| ||||||||||| || || || || || | |||| ||||||||| |||| || || ||||| | |
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| T |
51529337 |
ccctacatgctcggttttgggatctttcagattttattgtctcaaatcccaaatttccataagttaacattgatatcaactgttgctgctattacctctt |
51529436 |
T |
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| Q |
101 |
ttggttatg |
109 |
Q |
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||||||||| |
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| T |
51529437 |
ttggttatg |
51529445 |
T |
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