View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791_high_87 (Length: 244)
Name: NF0791_high_87
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_high_87 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6040721 - 6040953
Alignment:
| Q |
1 |
tttcaatacctgtattgcttaaatccaactcttcaatcgaatcagaggacaacgaaaattccctgagacttgagcagccactgacatcaattctctgtag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6040721 |
tttcaatacctgtattgcttaaatccaactcttcaatcgaatctgaggacaacgaaaattccctgagacttgagcagccactgacatcaattttctgtag |
6040820 |
T |
|
| Q |
101 |
agatgttaaatgcttctcagaaacaagaatctctaaccttttgcacccatctacaagcaaagtaacaaaggtgtccctggaagaaacagatggctgaact |
200 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||| ||||||||||||||| |||||||||||||| |||||| ||||| |||||||||| |||||| |
|
|
| T |
6040821 |
agatgttaaatgattctcactaacaagaatctccaactttttgcacccatctaaaagcaaagtaacaagtgtgtccttggaaaaaacagatggttgaact |
6040920 |
T |
|
| Q |
201 |
tcacgtaaactttcacaacccgagagatgcaac |
233 |
Q |
| |
|
||| |||||||||||||||| ||||||| |||| |
|
|
| T |
6040921 |
tcatgtaaactttcacaacctgagagatacaac |
6040953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6044353 - 6044585
Alignment:
| Q |
1 |
tttcaatacctgtattgcttaaatccaactcttcaatcgaatcagaggacaacgaaaattccctgagacttgagcagccactgacatcaattctctgtag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6044353 |
tttcaatacctgtattgcttaaatccaactcttcaatcgaatctgaggacaacgaaaattccctgagacttgagcagccactgacatcaattttctgtag |
6044452 |
T |
|
| Q |
101 |
agatgttaaatgcttctcagaaacaagaatctctaaccttttgcacccatctacaagcaaagtaacaaaggtgtccctggaagaaacagatggctgaact |
200 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||| ||||||||||||||| |||||||||||||| |||||| ||||| |||||||||| |||||| |
|
|
| T |
6044453 |
agatgttaaatgattctcactaacaagaatctccaactttttgcacccatctaaaagcaaagtaacaagtgtgtccttggaaaaaacagatggttgaact |
6044552 |
T |
|
| Q |
201 |
tcacgtaaactttcacaacccgagagatgcaac |
233 |
Q |
| |
|
||| |||||||||||||||| ||||||| |||| |
|
|
| T |
6044553 |
tcatgtaaactttcacaacctgagagatacaac |
6044585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 6125524 - 6125371
Alignment:
| Q |
15 |
ttgcttaaatccaactcttcaatcgaatcagaggacaacgaaaattccctgagacttgagcagccactgacatcaattctctgtagagatgttaaatgct |
114 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||| | |||||||| ||| ||||||||||||||||| |
|
|
| T |
6125524 |
ttgcttaaatccaatccttcaattgaatcagaggacaaagaaaattcaatgagacttgagcagccattaacatcaatattctttagagatgttaaatgct |
6125425 |
T |
|
| Q |
115 |
tctcagaaacaagaatctctaaccttttgcacccatctacaagcaaagtaacaa |
168 |
Q |
| |
|
|||| | |||||| | || || | ||||||| ||||| ||||||||||||| |
|
|
| T |
6125424 |
tctcgcatacaagattttccaatttcttgcacctatctagtagcaaagtaacaa |
6125371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University