View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791_low_1 (Length: 796)
Name: NF0791_low_1
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 98 - 766
Target Start/End: Complemental strand, 45597054 - 45596377
Alignment:
| Q |
98 |
cttctgtctttggatctttcaagactttttgaatgaattcttttacaaaactcacacaaacttcctattttacattaaagtgcccttggtgtatttgttt |
197 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45597054 |
cttcagtctttggatctttcaagactttttgaatgaattcttttacaaaactaacataaacttcctattttacattaaagtgcccttggtgtatttgttt |
45596955 |
T |
|
| Q |
198 |
agaagtccnnnnnnnntcnnnnnnnnnn-aaattgtgtattcaacgtattaaaactttaaaaagaaacttattttatataaattttataaaatctttctc |
296 |
Q |
| |
|
|||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45596954 |
agaaatccaaaaaaaatctttttttttttaaattgtgtattcaacgtattaaaa--------agaaacttattttatataaattttataaaatctttctc |
45596863 |
T |
|
| Q |
297 |
ttttgaatccttaataagtgtttttggaagagttgttaacgtaannnnnnnaaaaagtttatagtaannnnnnncttctttatgtaaactcaactcgatt |
396 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
45596862 |
ttttgaatccttaataagtgtttttagaacaattgttaaagtaattttttaaaaaagtttatagtaatttttttcttttttatgtaaactcaactcgatt |
45596763 |
T |
|
| Q |
397 |
tgactagtgagcagttcagttggaccattaatccgataaaatagtactactagatatgaacttctatctacttactattggaagacagcatagaatggat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45596762 |
tgactagtgagcagttcagttggaccattaatccgataaaatagtactactagatatgaacttctatc----tactattggaagacagcatagaatggat |
45596667 |
T |
|
| Q |
497 |
gatcgaattgttttttatctttccatctacaggagagattaatgtcaca--------caccctcctgtcaaaaaataaagagaaattatgaaaatgaatt |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45596666 |
gatcgaattgttttttatctttccatctacacaagagattaatgtcacacatttccccaccctcctgtcaaaaaataaagagaaattatgaaaatgaatt |
45596567 |
T |
|
| Q |
589 |
gtagaagcccacgttgagaaatattttgacacgttacacagttcgttcaagttcagctgataaatgaaactcgtcaacactatacaccttaaccaataaa |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45596566 |
gtagaagcccacgttgagaaatattttgacacgttacacagttcgttcaagttcagctgataaatgaaactcgtcaacactatacaccttaaccaataaa |
45596467 |
T |
|
| Q |
689 |
cattcattgccgatagtattgacttgtcttt------------tctctccaatccaccgcttcaaaaagttttcccacaacttcgcctga |
766 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
45596466 |
cattcattgccgatagtattgtcttgtcttttctcatcacttctctctccaatctaccgcttcaaaaagttttcacacaacttcacctga |
45596377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 28198096 - 28198005
Alignment:
| Q |
226 |
aaattgtgtattcaacgtattaaaactttaaaaagaaacttattttatataaattttataaaatcttt-ctcttttgaatccttaataagtg |
316 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||||| || || |||||||||||||| | ||| ||||||||||||||||| ||||| |
|
|
| T |
28198096 |
aaattgtgtattcaagacattgaaacttcaaaaagaaactttttctacataaattttataaattatttcctcttttgaatccttaacaagtg |
28198005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 39575558 - 39575467
Alignment:
| Q |
226 |
aaattgtgtattcaacgtattaaaactttaaaaagaaacttattttatataaattttataaaatcttt-ctcttttgaatccttaataagtg |
316 |
Q |
| |
|
|||||||||||| ||| ||| |||||| |||||||||||| || || ||||| |||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
39575558 |
aaattgtgtatttaacacattgaaacttcaaaaagaaactttttatacataaaatttataaattatttcctcttttgaatccttaataagtg |
39575467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 3855977 - 3856068
Alignment:
| Q |
226 |
aaattgtgtattcaacgtattaaaactttaaaaagaaacttattttatataaattttataaaatcttt-ctcttttgaatccttaataagtg |
316 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||| | |||| ||||| |||||||||||||| | ||| ||||||| ||| ||||| ||||| |
|
|
| T |
3855977 |
aaattgtgtattcaacacattgaaacttcaaaaatatactttttttacataaattttataaattatttcctcttttaaatacttaacaagtg |
3856068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 32931585 - 32931505
Alignment:
| Q |
226 |
aaattgtgtattcaacgtattaaaactttaaaaagaaacttattttatataaattttataaa-atctttctcttttgaatc |
305 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||| | ||||||||||| |||||||| | |||||||||||||||| |
|
|
| T |
32931585 |
aaattgtgtattcaacccattgaagttttaaaaagaaacattttttatataaaatttataaataactttctcttttgaatc |
32931505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 45185463 - 45185523
Alignment:
| Q |
226 |
aaattgtgtattcaacgtattaaaactttaaaaagaaacttattttatataaattttataaa |
287 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||| |
|
|
| T |
45185463 |
aaattgtatattcaacatattaaaactttaaaaagaaaatta-tttacataaaatttataaa |
45185523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University