View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_103 (Length: 264)

Name: NF0791_low_103
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_103
NF0791_low_103
[»] scaffold0101 (1 HSPs)
scaffold0101 (38-160)||(12881-13003)
[»] chr8 (5 HSPs)
chr8 (38-89)||(17322206-17322257)
chr8 (38-89)||(17327984-17328035)
chr8 (38-89)||(17305374-17305425)
chr8 (168-239)||(17342146-17342217)
chr8 (168-231)||(17318599-17318662)
[»] chr4 (1 HSPs)
chr4 (168-229)||(25658835-25658896)
[»] chr2 (1 HSPs)
chr2 (168-231)||(25850420-25850483)


Alignment Details
Target: scaffold0101 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 13003 - 12881
Alignment:
Q  38 tcatctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatgcaacttccctcagnnnnnnngaattttgtgtttgggtgttacagcgga 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  13003 tcatctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatgcaacttccctcagttcttttgaattttgtgtttgggtgttacagcgga 12904  T
Q  138 gacagactatgaatatttggtgt 160  Q
    |||||||||||||||||| ||||    
T  12903 gacagactatgaatatttagtgt 12881  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 17322257 - 17322206
Alignment:
Q  38 tcatctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17322257 tcatctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg 17322206  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 17328035 - 17327984
Alignment:
Q  38 tcatctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17328035 tcatctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg 17327984  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 17305425 - 17305374
Alignment:
Q  38 tcatctggtgttaacagggttagtgttacatgggtttggtgtaccacaaatg 89  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17305425 tcatctggtgttaacggggttagtgttacatgggtttggtgtaccacaaatg 17305374  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 17342217 - 17342146
Alignment:
Q  168 acgtcgctatcgtcatgaataattggaagataataaactgtttttcacacgtcttcgtctttgtttgcccta 239  Q
    ||||||||||||||| ||||||  ||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  17342217 acgtcgctatcgtcacgaataaccggacgataataaactgtttttcacatgtcttcgtctttgtctgcccta 17342146  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 17318662 - 17318599
Alignment:
Q  168 acgtcgctatcgtcatgaataattggaagataataaactgtttttcacacgtcttcgtctttgt 231  Q
    |||||||||||||||  |||||  ||| ||||||||| ||||||||||| ||||||||||||||    
T  17318662 acgtcgctatcgtcacaaataaccggaggataataaattgtttttcacatgtcttcgtctttgt 17318599  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 25658835 - 25658896
Alignment:
Q  168 acgtcgctatcgtcatgaataattggaagataataaactgtttttcacacgtcttcgtcttt 229  Q
    ||||| ||||| ||||||||||   || |||||||||||||||||||||||||||| |||||    
T  25658835 acgtcactatcatcatgaataaccagatgataataaactgtttttcacacgtcttcatcttt 25658896  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 25850420 - 25850483
Alignment:
Q  168 acgtcgctatcgtcatgaataattggaagataataaactgtttttcacacgtcttcgtctttgt 231  Q
    |||||| |||||||| ||||||   |||||||||||||  ||||||||| ||||||||||||||    
T  25850420 acgtcgttatcgtcacgaataacctgaagataataaaccatttttcacatgtcttcgtctttgt 25850483  T

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