View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_105 (Length: 259)
Name: NF0791_low_105
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_105 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 29809178 - 29808987
Alignment:
| Q |
21 |
tattcttttgcaagacactactatcctttatttgccctatttaagacaagctagttgcatgtgtattt-cacttcaaattctacactatagttctcnnnn |
119 |
Q |
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| T |
29809178 |
tattcttttgcaagacactactaccctttatt-gccctatttaaggcaagctagttgcatgtgtattttcacttaaaattctacactatagttctctttt |
29809080 |
T |
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| Q |
120 |
nnncttacaagttatcatggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttttggccactggtgagtagtgttt |
212 |
Q |
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| T |
29809079 |
tttcttacaagttatcatggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttgtggccactggtgagtagtgttt |
29808987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 29801720 - 29801654
Alignment:
| Q |
136 |
atggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttttggccactggtg |
202 |
Q |
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| T |
29801720 |
atggctcgttcacttcctttggtttccaccatctttgttttttttcttcttcttgtggccactggtg |
29801654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 29804838 - 29804772
Alignment:
| Q |
136 |
atggctcgttcagttcctttggtttccaccatctttgtcttccttctgcttcttttggccactggtg |
202 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||| ||| || |||||||||||| |
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| T |
29804838 |
atggctcgttcagtgtctttggtttccaccatctttgtcttttttcttcttattgtggccactggtg |
29804772 |
T |
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