View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791_low_112 (Length: 252)
Name: NF0791_low_112
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_112 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 23782590 - 23782705
Alignment:
| Q |
126 |
catacatgatttcatgtacaatatttgaaaataacttgttaacataaatcaaaattgcttcaacacccttgtagtattccatctctagcagaaagcaatg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23782590 |
catacatgatttcatgtacaatatttgaaaataacttgttaacataaatcaaaattgcttcaacacccttgtagtattccatctctagcagaaagcaatg |
23782689 |
T |
|
| Q |
226 |
aagcagtactattcat |
241 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
23782690 |
aagcagtactattcat |
23782705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 23782532 - 23782593
Alignment:
| Q |
18 |
gtgtaagacagtccttacacaatgtataaatagaggtttacataccgatatctattttcata |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23782532 |
gtgtaagacagtccttacacaatgtataaatagaggtttacataccgatatctattttcata |
23782593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University