View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_116 (Length: 251)
Name: NF0791_low_116
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_116 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 38771060 - 38770820
Alignment:
| Q |
11 |
caaaggactaaattgactgagactgtttaatttaaggaactaaatcgctaattcgcaaatttgaccaactcttactatttcaaggactaaaatgttgatt |
110 |
Q |
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| T |
38771060 |
caaaggactaaattgactgagactgtttaatttaaggaactaaatcgctaatttgcaaatttgaccaactcttactatttcaaggactaaaatgttgatt |
38770961 |
T |
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| Q |
111 |
tactcttactctattattactatacatgtataccttttttaaatgttggtgtgtgaacacattcccacatggattgctaggattaatgaggaccatagca |
210 |
Q |
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| T |
38770960 |
tactcttactctattattactatacatgtataccttttttaaatgttggtgtgtgaacacattcccacatggattgctaggattaatgaggaccatagca |
38770861 |
T |
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| Q |
211 |
acagtgttctcatctgttaaggcttcaacggaatcaaggtc |
251 |
Q |
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| T |
38770860 |
acagtgttctcatctgttaaggcttcaatggaatcaaggtc |
38770820 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 31596709 - 31596671
Alignment:
| Q |
77 |
aactcttactatttcaaggactaaaatgttgatttactc |
115 |
Q |
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| T |
31596709 |
aactcttactatttcaaggactaaaatgctgatttactc |
31596671 |
T |
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