View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_118 (Length: 250)
Name: NF0791_low_118
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_118 |
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| [»] scaffold0208 (1 HSPs) |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 35632245 - 35632027
Alignment:
| Q |
3 |
tctgtctcagaacactcaaacccctgtggccgagggttcacagactcagagatgtttgggtcagagttctcaggctcagagccgttgggagaatgttaaa |
102 |
Q |
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| T |
35632245 |
tctggctcagaacactcaaacccctgtggtcgagggttcacagactcagagacgtttgggtcagagttctcaggctcagagccgttaggagaatgttaaa |
35632146 |
T |
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| Q |
103 |
cttcgggtttcaccgaaacggcactcaatataaatttaaatttagaatgtaaactgttctaacttatttcagccattgagatctgttaactctattggtt |
202 |
Q |
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| T |
35632145 |
ctgcgggtttcaccgaaacggcattcgatataaatttcaatttagaatgtaaactgttctaacttatttcagccattgagatctgttaactctattggtt |
35632046 |
T |
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| Q |
203 |
ggatgtttttctattcact |
221 |
Q |
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||||||||||||||||||| |
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| T |
35632045 |
ggatgtttttctattcact |
35632027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 35635418 - 35635353
Alignment:
| Q |
156 |
ctgttctaacttatttcagccattgagatctgttaactctattggttggatgtttttctattcact |
221 |
Q |
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| T |
35635418 |
ctgttataacttccttcaaccattgagatttgttaactctattggttgaatgtttttcttttcact |
35635353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 10571739 - 10571676
Alignment:
| Q |
156 |
ctgttctaacttatttcagccattgagatctgttaactctattggttggatgtttttctattca |
219 |
Q |
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| T |
10571739 |
ctgttataacttccttcaaccattgagatttgttaactctattggttgaatgtttttcttttca |
10571676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 15270 - 15335
Alignment:
| Q |
156 |
ctgttctaacttatttcagccattgagatctgttaactctattggttggatgtttttctattcact |
221 |
Q |
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||||| |||||| |||| |||||||||| |||||||||||||||||| |||||||||| |||||| |
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| T |
15270 |
ctgttataacttccttcaaccattgagatttgttaactctattggttgaatgtttttcttttcact |
15335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 2696 - 2651
Alignment:
| Q |
176 |
cattgagatctgttaactctattggttggatgtttttctattcact |
221 |
Q |
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| T |
2696 |
cattgagatttgttaactctattggttgaatgttttacttttcact |
2651 |
T |
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