View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_120 (Length: 244)
Name: NF0791_low_120
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_120 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28243602 - 28243378
Alignment:
| Q |
1 |
aagggcattgaaacatgacaatagtctaaatgtgacgagtggagaaaaagaattttaattctgatctataagaataacagtgtacacgaaattgtgcaaa |
100 |
Q |
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| T |
28243602 |
aagggcattgaaacatgacaatagtctaaatgtgacgagtggagaaaaagaattttaattctgatctataagaataacagtgtacacaaaattgtgcaaa |
28243503 |
T |
|
| Q |
101 |
ttatagctgatcaaacttatgaatcatgctataaagttttgagaaagagtgatcaaacagagattaagaaaagagactcaagttattaataatcaattta |
200 |
Q |
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| T |
28243502 |
ttatagctgatcaaacttatgaatcatgctataaagttttgagaaagagtgatctaacagagattaagaaaagagactcaagttactaataatcaattta |
28243403 |
T |
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| Q |
201 |
attttatg-tcggaagtcgaccatg |
224 |
Q |
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|||||||| | |||||||||||||| |
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| T |
28243402 |
attttatgttgggaagtcgaccatg |
28243378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 7789698 - 7789633
Alignment:
| Q |
144 |
aaagagtgatcaaacagagattaagaaaagagactcaagttattaataatcaatttaattttatgt |
209 |
Q |
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| T |
7789698 |
aaagagtgattgaacaaagattaacaaaagagactcgagttactcataatcaatttggttttatgt |
7789633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 48220808 - 48220880
Alignment:
| Q |
113 |
aaacttatgaatcatgctataaagttttgagaaagagtgatcaaacagagattaagaaaagagactcaagtta |
185 |
Q |
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| T |
48220808 |
aaacttatgaatcatatcatgaagttatgatagagagtgattaaacaaacattaagaaaagagactcgagtta |
48220880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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