View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_123 (Length: 237)
Name: NF0791_low_123
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_123 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 49665655 - 49665809
Alignment:
| Q |
1 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
100 |
Q |
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| T |
49665655 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
49665754 |
T |
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| Q |
101 |
taactatacgtgtccgcattatgatctctactaccagcctcatagccatgatgat |
155 |
Q |
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| T |
49665755 |
taactatacgtgtccgcactatgatctctactaccagcctcatagccatgctgat |
49665809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 49709212 - 49709366
Alignment:
| Q |
1 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
100 |
Q |
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| T |
49709212 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
49709311 |
T |
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| Q |
101 |
taactatacgtgtccgcattatgatctctactaccagcctcatagccatgatgat |
155 |
Q |
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| T |
49709312 |
taactatacgtgtccgcactatgatctctactaccagcctcatagccatgctgat |
49709366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 49864575 - 49864522
Alignment:
| Q |
42 |
tacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatat |
95 |
Q |
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| T |
49864575 |
tacacaaccttgttcatgtgcaaccgtaccctccatgtcagccctccaacatat |
49864522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 49210408 - 49210458
Alignment:
| Q |
59 |
gtgcaaccgtaccctccatatcaaccctccaacatatatgcataactatac |
109 |
Q |
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| T |
49210408 |
gtgcaaccttactctccatgtcaaccctccaacatatatgcataattatac |
49210458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 41686244 - 41686187
Alignment:
| Q |
52 |
tgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgcataactatac |
109 |
Q |
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| T |
41686244 |
tgttcatgtgcaaccgtactctccatatcaaacgtccaacatatatgcataattatac |
41686187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 18317611 - 18317668
Alignment:
| Q |
52 |
tgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgcataactatac |
109 |
Q |
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| T |
18317611 |
tgttcatgtgcaacagtactctccatatcaaacttccaacatatatgcataattatac |
18317668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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