View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_124 (Length: 230)

Name: NF0791_low_124
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_124
NF0791_low_124
[»] chr8 (8 HSPs)
chr8 (23-214)||(39188224-39188415)
chr8 (68-143)||(2875793-2875868)
chr8 (68-143)||(2795862-2795937)
chr8 (81-143)||(3144920-3144982)
chr8 (68-143)||(3159501-3159576)
chr8 (53-138)||(4416030-4416116)
chr8 (106-143)||(2890311-2890348)
chr8 (105-141)||(3494363-3494399)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 39188224 - 39188415
Alignment:
Q  23 tggctcaccatggaccataggcccaagtgtagtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatctt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188224 tggctcaccatggaccataggcccaagtgtagtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatctt 39188323  T
Q  123 ttagaagctcttgcatattcacgacgtcagtgcaatgattcccctttttctttcttcttatgagcagcttctatcttctctttattgctcat 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  39188324 ttagaagctcttgcatattcacgacgtcggtgcaatgattcccctttttctttcttcttatgagcagcttctcacttctctttattgttcat 39188415  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 2875793 - 2875868
Alignment:
Q  68 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 143  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  2875793 tgtagtggatgatggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattca 2875868  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 2795937 - 2795862
Alignment:
Q  68 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 143  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  2795937 tgtagtggatgatggtgaaatatattaatgtaacatggttaccttctgatatcttttagaagctcttgcatattca 2795862  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 3144982 - 3144920
Alignment:
Q  81 ggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 143  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  3144982 ggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattca 3144920  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 3159576 - 3159501
Alignment:
Q  68 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 143  Q
    |||||||||||| |||||||||||| ||||| || |||||||||||| |||||| || ||||||||||||||||||    
T  3159576 tgtagtggatgatggtgaaatatattaatgttacctggttaccttctgaaatctcttggaagctcttgcatattca 3159501  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 4416116 - 4416030
Alignment:
Q  53 agtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaa-cttggttaccttctcaaatcttttagaagctcttgcat 138  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||| ||  |||||||||  ||||||||||||||| |||||||    
T  4416116 agtgtcctatcacattgtagtggatgagggtgaaatatatcaatgtaacctcagttaccttcataaatcttttagaagcccttgcat 4416030  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 2890311 - 2890348
Alignment:
Q  106 ttaccttctcaaatcttttagaagctcttgcatattca 143  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2890311 ttaccttctgaaatcttttagaagctcttgcatattca 2890348  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 3494363 - 3494399
Alignment:
Q  105 gttaccttctcaaatcttttagaagctcttgcatatt 141  Q
    |||||||||||| |||||||||||||| |||||||||    
T  3494363 gttaccttctcatatcttttagaagcttttgcatatt 3494399  T

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