View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_127 (Length: 226)
Name: NF0791_low_127
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_127 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 37008655 - 37008866
Alignment:
| Q |
1 |
tcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgtatacaatacacattatgagaacttttgaatcgaaattaag |
100 |
Q |
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| T |
37008655 |
tcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgtatacaatacacattatgagaacttttgaatcgaaattaag |
37008754 |
T |
|
| Q |
101 |
gaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgattgaagaaatataaatgttaccaagacattcattgcaccagct |
200 |
Q |
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| T |
37008755 |
gaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgattgaagaaatataaatgttaccaagacattcattgcaccagct |
37008854 |
T |
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| Q |
201 |
ctgtgatgatgt |
212 |
Q |
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||||||||||| |
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| T |
37008855 |
ttgtgatgatgt |
37008866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37025837 - 37025896
Alignment:
| Q |
1 |
tcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgt |
60 |
Q |
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|||||||||||||| | || || |||||||||||||||| ||||||||||||||||||| |
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| T |
37025837 |
tcacaatctaagttcaatatgaaaggagcatttgtcatcattccagagactcttgtctgt |
37025896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37044834 - 37044892
Alignment:
| Q |
1 |
tcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
59 |
Q |
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||||| |||| ||| | |||||| |||||||| |||||||||||||||||||||||||| |
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| T |
37044834 |
tcacagtctacgttcaacataaaaggagcattggtcatcaatccagagactcttgtctg |
37044892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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