View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791_low_13 (Length: 549)
Name: NF0791_low_13
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 18667367 - 18667903
Alignment:
| Q |
1 |
gttacactatgaaagatatttcaaggcgtctgatgtgaccacaatggtggcccatgatacaaaaaataagttaacatgaaggcagggcataacaatcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18667367 |
gttacactatgaaagatatttcaaggcgtctgatgtgaccacaatggtggcccatgatacaaaaaataagttaacatgaaggcagggcataacaatcaaa |
18667466 |
T |
|
| Q |
101 |
attgattacatgataaacatacgtaaaagattcatcaacttaaactcacctaaacattaataatttaacatcagaagtggtcatcttcaaattaatttag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18667467 |
attgattacatgataaacatatgtaaaagattcatcaacttaaactcacctaaacattaataatttaacatcagaagtggtcatcttcaaattaatttag |
18667566 |
T |
|
| Q |
201 |
caactcaactttatagagaaaccacaaagcatctgaaatgtttagatatataaaattgcagagttgaaaactttaacttcaaataatcacataaaaaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18667567 |
caactcaactttatagagaaaccacaaagcatctgaaatgtttagatatataaaattgcagagttgaaaactttaacttcaaataatcacataaaaaact |
18667666 |
T |
|
| Q |
301 |
agaagaatgaacgtttgctttgttggaattctataaattttggataagctttaagaatacattgttaatcaaatttggtctatacactagccacatcata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18667667 |
agaagaatgaacgtttgctttgttggaattctataaat----gataagcttt---aatacattgttaatcaaatttggtctatacactagccacgtcata |
18667759 |
T |
|
| Q |
401 |
ttgattttcatgaaatagtgagtgaaatgaactaagctgcacaaatgcatcactgaagtaacagtggttaatgtaacgaaccaatatcacttaatgaa-c |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| | |
|
|
| T |
18667760 |
ttgattttcatgaaatagtgagtgaaatgaactaagctgcacaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttaatgaatc |
18667859 |
T |
|
| Q |
500 |
tctaaatttttgccatcctaactatcactaaatctagtcatttgt |
544 |
Q |
| |
|
| ||| ||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
18667860 |
acaaaaaatttcccagcct-actatcactaaatctagtcatttgt |
18667903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 15077420 - 15076878
Alignment:
| Q |
1 |
gttacactatgaaagatatttcaaggcgtctgatgtgaccacaatggtggcccatgatacaaaaaataagttaacatgaaggcagggcataacaatcaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15077420 |
gttacaccatgaaagatatttcaaggcgtctgatgtgaccacaatggtggcccatgatacaaaaaataagttaacatgaaggcagggcataacaatcaaa |
15077321 |
T |
|
| Q |
101 |
attgattacatgataaacatacgtaaaagattcatcaacttaaactcacctaaacattaataatttaacatcagaagtggtcatcttcaaattaatttag |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15077320 |
attgattacatgataaacatatgtaaaagattcatcaacataaactcacctaaacattaataatttaacatcagaagtggccatcttcaaattaatttag |
15077221 |
T |
|
| Q |
201 |
caactcaactttatagagaaaccacaaagcatctgaaatgtttagatatataaaattgcagagttgaaaactttaacttcaaataatcacataaaaaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15077220 |
caactcaactttatagagaaaccacaaagcatctgaaatgtttaaatatataaaattgcagagttgaaaactttaacttcaaataatcacataaaaaact |
15077121 |
T |
|
| Q |
301 |
agaagaatgaacgtttgctttgttggaattctataaattttggataagctttaagaatacattgttaatcaaatttggtctatacactagccacatcata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15077120 |
agaagaatgaacgtttgctttgttggaattctataaattttggataagcttt---aatacattgttaatcaaatttggtctatacactagccacgtcata |
15077024 |
T |
|
| Q |
401 |
ttgattttcatgaaatagtgagtgaaatgaactaagctgcacaaatgcatcactgaagtaacagtggttaatgtaacgaaccaatatcacttaatgaa-c |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||| | |
|
|
| T |
15077023 |
ttgattttcatgaaatagtgagtgaaatgaactaagctgcacaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttcatgaatc |
15076924 |
T |
|
| Q |
500 |
tctaaatttttg--ccatcctaactatcactaaatctagtcatttgt |
544 |
Q |
| |
|
| ||||||||| ||| ||| |||||||||||||||| |||||||| |
|
|
| T |
15076923 |
acaaaatttttgccccagcct-actatcactaaatctattcatttgt |
15076878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 4 - 400
Target Start/End: Complemental strand, 21929671 - 21929280
Alignment:
| Q |
4 |
acactatgaaagatatttcaaggcgtctgatgtgaccacaatggtggcccatgatacaaaaaataagttaacatgaaggcagggcataacaatcaaaatt |
103 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
21929671 |
acaccatgaaagatatttcaaggcatctgatgtggccacaatggtggcccatgatacaaaaaataagttaacatgaaggcagggcaaaacaaataaaatt |
21929572 |
T |
|
| Q |
104 |
gattacatgataaacatacgtaaaagattcatcaacttaaactcacctaaacattaataatttaacatcagaagtggtcatcttcaaattaatttagcaa |
203 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21929571 |
gattacatgataaacatatgtaaaagattcatcaacttaaactcgcctaaacattaataattttacatcagaagttgtcatcttcaaattaatttagcaa |
21929472 |
T |
|
| Q |
204 |
ctcaactttatagagaaaccacaaagcatctgaaatgtttagatatataaaattgcagagttgaaaactttaacttcaaataatcacataaaaaactaga |
303 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21929471 |
ctcaacattatagagaaaccacaaagcatctgaaatgtttagacatataaaattgcagagttgaaaactttaacttcaaataatcacataaaaaactaga |
21929372 |
T |
|
| Q |
304 |
agaatgaacgtttgctttgttggaattctataaattttggataagctttaagaatacattgttaatcaaatttggtctatacactagccacatcata |
400 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21929371 |
agaatgaatgtttgctttagttgaattctataaattttggataagctttaagaa-----ggttaatcaaatttggtctatacactagccacatcata |
21929280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 201 - 415
Target Start/End: Complemental strand, 22182842 - 22182628
Alignment:
| Q |
201 |
caactcaactttatagagaaaccacaaagcatctgaaatgtttagatatataaaattgcagagttgaaaactttaacttcaaataatcacataaaaaact |
300 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| | |||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22182842 |
caactgaactttatagagaaactacaaagcatctgaaacgcctagacatataaaactgcagagctgaaaactttaacttcaagtaatcacataaaaaact |
22182743 |
T |
|
| Q |
301 |
agaagaatgaacgtttgctttgttggaattctataaattttggataagctttaagaatacattgttaatcaaatttggtctatacactagccacatcata |
400 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |
|
|
| T |
22182742 |
agaagaatgaacattttctttagtggaattctataaattttggataagctttaagaatacatggttaatcaaatttggtctatacacgagccacatcaaa |
22182643 |
T |
|
| Q |
401 |
ttgattttcatgaaa |
415 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
22182642 |
ttgattgtcatgaaa |
22182628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 190 - 393
Target Start/End: Complemental strand, 21944159 - 21943952
Alignment:
| Q |
190 |
aattaatttagcaactcaact-----ttatagagaaaccacaaagcatctgaaatgtttagatatataaaattgcagagttgaaaactttaacttcaaat |
284 |
Q |
| |
|
||||||||||||||||||||| ||| || |||| || |||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
21944159 |
aattaatttagcaactcaactatactttagagggaaatcagaaagcatctgaaatatttagaaatataaaattgcagagctgaaaactt-aacttcaaat |
21944061 |
T |
|
| Q |
285 |
aatcacataaaaaactagaagaatgaacgtttgctttgttggaattctataaattttggataagctttaagaatacattgttaatcaaatttggtctata |
384 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21944060 |
aatcacacaaaaaactagaagaatgaacatttgctttagtggaattttataaattttggataagctttaagaatacatcgttaatcaaatttggtctata |
21943961 |
T |
|
| Q |
385 |
cactagcca |
393 |
Q |
| |
|
||||||||| |
|
|
| T |
21943960 |
cactagcca |
21943952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 22032969 - 22032852
Alignment:
| Q |
151 |
taaacattaataatttaacatcagaagtggtcatcttcaaattaatttagcaac-----tcaactttatagagaaaccacaaagcatctgaaatgtttag |
245 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
22032969 |
taaaaattaataatttaatatcagaagtggtcatcttaaaattaatttagcaacgtaactcaactttagagataaaccagaaagcatctgaaatgtttag |
22032870 |
T |
|
| Q |
246 |
atatataaaattgcagag |
263 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
22032869 |
acatataaaattgcagag |
22032852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 426 - 539
Target Start/End: Complemental strand, 21929280 - 21929164
Alignment:
| Q |
426 |
aatgaactaagctgcacaaatgcatcactgaagt-aacagtggttaatgtaacgaaccaatatcacttaatgaa-ctctaaatttttgc--catcctaac |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| | |||||||||||| || ||| || |
|
|
| T |
21929280 |
aatgaactaagctgcacaaatgcatcactgaagtaaacagtggccaatgtaaccaaccaataccacttaatgaatcactaaatttttgcctcagcct-ac |
21929182 |
T |
|
| Q |
522 |
tatcactaaatctagtca |
539 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21929181 |
tatcactaaatctagtca |
21929164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 398 - 464
Target Start/End: Complemental strand, 21941683 - 21941618
Alignment:
| Q |
398 |
atattgattttcatgaaatagtgagtgaaatgaactaagctgcacaaatgcatcactgaagtaacag |
464 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21941683 |
atattgattgtcatgaaatagt-agtaaaatgaactaagctgcacaaatgtatcactgaagtaacag |
21941618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 21943849 - 21943935
Alignment:
| Q |
124 |
taaaagattcatcaacttaaactcacctaaacattaataatttaacatcagaagtggtcatcttcaaattaatttagcaactcaact |
210 |
Q |
| |
|
|||||||||| || || ||| || ||||||||||||||| ||||| |||| ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
21943849 |
taaaagattcttctacataatctgacctaaacattaatattttaaaatcataagaggttgtcttcaaattaatttagcaactcaact |
21943935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 21944813 - 21944731
Alignment:
| Q |
102 |
ttgattacatgataaacatacgtaaaagattcatcaacttaaactcacctaaacattaataatttaacatcagaagtggtcatct |
186 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||| ||||||||| ||||||||| |||||||| || || |||||||||||||| |
|
|
| T |
21944813 |
ttgattacttgataaacaa--gtaaaagatccatccacttaaacttacctaaacaataataattaaatataagaagtggtcatct |
21944731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 492
Target Start/End: Complemental strand, 22122384 - 22122338
Alignment:
| Q |
446 |
tgcatcactgaagtaacagtggttaatgtaacgaaccaatatcactt |
492 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||| ||||| |
|
|
| T |
22122384 |
tgcatcactgaagtaacagtggttaatgtcaccaatcaataccactt |
22122338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 413 - 514
Target Start/End: Complemental strand, 11034276 - 11034174
Alignment:
| Q |
413 |
aaatagtgagtgaaatgaactaagctgcacaaatgcatcactgaagtaacagtggttaatgtaacgaaccaatatcacttaatgaa-ctctaaatttttg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| | ||||||||||| |
|
|
| T |
11034276 |
aaatagtgagtgaaatgaactaagctgcaaaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttaatgaatcactaaatttttg |
11034177 |
T |
|
| Q |
512 |
cca |
514 |
Q |
| |
|
||| |
|
|
| T |
11034176 |
cca |
11034174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University