View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_134 (Length: 217)

Name: NF0791_low_134
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_134
NF0791_low_134
[»] chr7 (3 HSPs)
chr7 (12-201)||(3752780-3752969)
chr7 (18-198)||(4047272-4047452)
chr7 (69-190)||(9664309-9664430)
[»] chr6 (11 HSPs)
chr6 (27-198)||(6466373-6466544)
chr6 (57-198)||(6506526-6506667)
chr6 (60-199)||(6458415-6458554)
chr6 (78-190)||(6529247-6529359)
chr6 (78-198)||(6472058-6472178)
chr6 (94-198)||(6519604-6519708)
chr6 (61-190)||(6497721-6497850)
chr6 (96-186)||(6460857-6460947)
chr6 (78-186)||(6515107-6515215)
chr6 (96-190)||(7204144-7204239)
chr6 (96-190)||(7238895-7238990)
[»] chr4 (1 HSPs)
chr4 (69-190)||(13535333-13535454)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 3752780 - 3752969
Alignment:
Q  12 tcatcatcttctgttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctcc 111  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752780 tcatcatcttctcttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctcc 3752879  T
Q  112 ctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaactttt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752880 ctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaactttt 3752969  T

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Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 4047452 - 4047272
Alignment:
Q  18 tcttctgttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaa 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  4047452 tcttctgttcctttcctatttcctcaaactcattcaactgtccttccaaacccttcaaatttcttctcacaaaacttactatccacacctctccctacaa 4047353  T
Q  118 actctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaact 198  Q
    |||| ||||||||||| |||||||| || ||||||||   || |||||||||||||||||||||  |||||||||||||||    
T  4047352 actcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaact 4047272  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 9664309 - 9664430
Alignment:
Q  69 ccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaataca 168  Q
    ||||| || |||||||| | ||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||  |  ||||||||    
T  9664309 ccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaataca 9664408  T
Q  169 ttcacccttacctcatcaaatc 190  Q
    |||||||||| ||| |||||||    
T  9664409 ttcacccttatctcgtcaaatc 9664430  T

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Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 6466544 - 6466373
Alignment:
Q  27 cctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttct 126  Q
    ||||||||||| || || |||||||| || ||||||||  ||||  ||||||||||||| | ||| || ||||||||||||||||| |||||||||||||    
T  6466544 cctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttct 6466445  T
Q  127 tccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaact 198  Q
    ||||||||||||||||| | |||||||||  ||||||||||||||| || || ||||||||||| |||||||    
T  6466444 tccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaact 6466373  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 198
Target Start/End: Complemental strand, 6506667 - 6506526
Alignment:
Q  57 gtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgaca 156  Q
    ||||||||  |||| || || |||||||| | ||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||      
T  6506667 gtcctccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatggtgatg 6506568  T
Q  157 cacctgaatacattcacccttacctcatcaaatcctcaaact 198  Q
    ||||||||||| |||| ||||||||||||||||| |||||||    
T  6506567 cacctgaatactttcatccttacctcatcaaatcatcaaact 6506526  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 6458554 - 6458415
Alignment:
Q  60 ctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacac 159  Q
    |||||| ||||||||||||||||||| |  || || || ||  | || ||||| |||||||||||||||||||| |||||||| || |||||||||||||    
T  6458554 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 6458455  T
Q  160 ctgaatacattcacccttacctcatcaaatcctcaaactt 199  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  6458454 ctgagtacattcacccttacctcatcaaatcctcaaactt 6458415  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 6529359 - 6529247
Alignment:
Q  78 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 177  Q
    |||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| || |    
T  6529359 ttcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatggtgaccaacctgaatacattcatccat 6529260  T
Q  178 acctcatcaaatc 190  Q
    | |||||||||||    
T  6529259 atctcatcaaatc 6529247  T

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Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 6472058 - 6472178
Alignment:
Q  78 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 177  Q
    |||||||||| |||  | ||||||||||||||||||||||||||||||||||||||| |||| ||  | |||||||||  ||||||||||||||| ||||    
T  6472058 ttcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatggtgaccaacctgaatacattcatcctt 6472157  T
Q  178 acctcatcaaatcctcaaact 198  Q
    ||||||||||||| |||||||    
T  6472158 acctcatcaaatcatcaaact 6472178  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 6519604 - 6519708
Alignment:
Q  94 tactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctc 193  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||  ||||||||| ||||| || |||||||| ||||| ||    
T  6519604 tactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatatattcatccatacctcattaaatcatc 6519703  T
Q  194 aaact 198  Q
    |||||    
T  6519704 aaact 6519708  T

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Target: chr6; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 6497850 - 6497721
Alignment:
Q  61 tcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacc 160  Q
    ||||| |||| || || ||||||||  |||| || ||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||  |||    
T  6497850 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 6497751  T
Q  161 tgaatacattcacccttacctcatcaaatc 190  Q
    ||||||  |||| |||||||||||||||||    
T  6497750 tgaatattttcatccttacctcatcaaatc 6497721  T

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Target: chr6; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 6460857 - 6460947
Alignment:
Q  96 ctatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatca 186  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||  ||| |||||| |||| |||||||||||||    
T  6460857 ctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatca 6460947  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 6515107 - 6515215
Alignment:
Q  78 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 177  Q
    |||||||| | ||| || ||||| ||||||||||| ||||||||||||||||||||||||  ||||    | ||||| |||||||||||||| || ||||    
T  6515107 ttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatccatcctt 6515206  T
Q  178 acctcatca 186  Q
    |||||||||    
T  6515207 acctcatca 6515215  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 7204144 - 7204239
Alignment:
Q  96 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 190  Q
    ||||||||||||| |||| || |  ||||||||||||||||||||||||  ||||||||||  ||||||||||||||| || |||||||| |||||    
T  7204144 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatc 7204239  T

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Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 7238895 - 7238990
Alignment:
Q  96 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 190  Q
    ||||||||||||| |||| || |  ||||||||||||||||||||||||  ||||||||||  ||||||||||||||| || |||||||| |||||    
T  7238895 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatc 7238990  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 13535333 - 13535454
Alignment:
Q  69 ccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaataca 168  Q
    ||||| || |||||||| | ||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||  |  ||||||||    
T  13535333 ccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaataca 13535432  T
Q  169 ttcacccttacctcatcaaatc 190  Q
    |||||||||| ||| |||||||    
T  13535433 ttcacccttatctcgtcaaatc 13535454  T

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