View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_142 (Length: 202)
Name: NF0791_low_142
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_142 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 4e-49; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 39188322 - 39188224
Alignment:
| Q |
1 |
agatttgagaaggtaaccaagttacattgatatatttcaccctcatccactacagtgcgttaggacactacacttgggcctatggtccatggtgagcca |
99 |
Q |
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| T |
39188322 |
agatttgagaaggtaaccaagttacattgatatatttcaccctcatccactacagtgcgttaggacactacacttgggcctatggtccatggtgagcca |
39188224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2875846 - 2875793
Alignment:
| Q |
1 |
agatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca |
54 |
Q |
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| T |
2875846 |
agatttcagaaggtaaccaggttacattaatatatttcaccatcatccactaca |
2875793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 4416068 - 4416116
Alignment:
| Q |
21 |
gttacattgatatatttcaccctcatccactacagtgcgttaggacact |
69 |
Q |
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| T |
4416068 |
gttacattgatatatttcaccctcatccactacaatgtgataggacact |
4416116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 2795891 - 2795937
Alignment:
| Q |
8 |
agaaggtaaccaagttacattgatatatttcaccctcatccactaca |
54 |
Q |
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| T |
2795891 |
agaaggtaaccatgttacattaatatatttcaccatcatccactaca |
2795937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3159523 - 3159576
Alignment:
| Q |
1 |
agatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca |
54 |
Q |
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| T |
3159523 |
agatttcagaaggtaaccaggtaacattaatatatttcaccatcatccactaca |
3159576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3144942 - 3144982
Alignment:
| Q |
1 |
agatttgagaaggtaaccaagttacattgatatatttcacc |
41 |
Q |
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| T |
3144942 |
agatttcagaaggtaaccaggttacattaatatatttcacc |
3144982 |
T |
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