View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_16 (Length: 533)
Name: NF0791_low_16
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 93 - 504
Target Start/End: Complemental strand, 29913259 - 29912848
Alignment:
| Q |
93 |
taaaccaacatactagataataaaataaacagtgacattatatgagcattatttttcttttcttttctgtgtggtgaaaataaaatgcaaggagtaagaa |
192 |
Q |
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| T |
29913259 |
taaaccaacatactagacaataaaataaacagtgacaatatatgggcattgttttt-ttttcttttctgtgtggtgaaaataaaatgcaaggagtaagaa |
29913161 |
T |
|
| Q |
193 |
taacatagtacatattataaacaaa-tagctactcaacatagataaataagcatatgtgatgagtaaccgtttagtcataagcatttatgtcttcattgt |
291 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29913160 |
taacgtagtacatattataaacaaactagctactcaacatagataaataaacatatgtgatgagtaaccgtttagtcataagcatttatgtcttcattgt |
29913061 |
T |
|
| Q |
292 |
ctaataatataaatttatgttagaaccatcaactataacattctttaaaggggtatccctcaaccaaaacatttttgtacatggtgcatgagttgttgaa |
391 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29913060 |
ataataatataaatttgtgttagaaccatcaactataacattctttaaaggggtatccctcaaccaaaacatttttgtacatggtgcatgagttgttgaa |
29912961 |
T |
|
| Q |
392 |
actttaaactcacgctccttcccaatagccatgatacaaaaagaagataaatcaaaatctttatatttctttttgaacgacaaaccaaaatttatataat |
491 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29912960 |
actttaaactcgcgctccttcccaatagccatgatacaaaaagaagataaatcaaaatctttatatttctttttgaacgacaaaccaaaatttatataat |
29912861 |
T |
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| Q |
492 |
attgtatctaaat |
504 |
Q |
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| T |
29912860 |
attgtatctaaat |
29912848 |
T |
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