View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_17 (Length: 519)

Name: NF0791_low_17
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_17
NF0791_low_17
[»] chr5 (6 HSPs)
chr5 (27-130)||(36955762-36955865)
chr5 (313-391)||(36955558-36955636)
chr5 (243-284)||(36955666-36955707)
chr5 (243-282)||(34764015-34764054)
chr5 (355-391)||(31193966-31194002)
chr5 (355-391)||(31194229-31194265)
[»] chr8 (3 HSPs)
chr8 (355-407)||(31547581-31547633)
chr8 (243-282)||(33368121-33368160)
chr8 (347-391)||(6911302-6911346)
[»] chr4 (2 HSPs)
chr4 (355-407)||(26297324-26297376)
chr4 (355-391)||(9551489-9551525)
[»] chr2 (6 HSPs)
chr2 (355-407)||(33491330-33491382)
chr2 (243-282)||(11741290-11741329)
chr2 (361-407)||(8237860-8237906)
chr2 (65-130)||(12493893-12493958)
chr2 (355-391)||(4371455-4371491)
chr2 (355-391)||(22563211-22563247)
[»] chr1 (3 HSPs)
chr1 (357-401)||(13946934-13946978)
chr1 (243-282)||(13021046-13021085)
chr1 (355-387)||(34622593-34622625)
[»] scaffold0311 (1 HSPs)
scaffold0311 (243-282)||(9267-9306)
[»] chr3 (4 HSPs)
chr3 (243-282)||(53881218-53881257)
chr3 (355-401)||(46883425-46883471)
chr3 (355-391)||(38499820-38499856)
chr3 (355-391)||(38500085-38500121)
[»] chr7 (2 HSPs)
chr7 (355-391)||(19318483-19318519)
chr7 (355-391)||(25048288-25048324)
[»] chr6 (1 HSPs)
chr6 (355-407)||(33277316-33277368)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 36955865 - 36955762
Alignment:
Q  27 tcaatatgaagtgctagtacttttctaggatgtcgctttgcaccagcagatttaagtgtagtccatgtgagaagttgcaaacattaatacatctatgtgt 126  Q
    |||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  36955865 tcaatatgaagtgctagtacttttctagaacttcgctttgcaccagcagatttaagtgcagtccatgtgagaagctgcaaacattaatacatctatgtgt 36955766  T
Q  127 catt 130  Q
    ||||    
T  36955765 catt 36955762  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 36955636 - 36955558
Alignment:
Q  313 ctcaaaatttaaaaagacactgaacattcactcttttcattaagttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||| |||||    
T  36955636 ctcaaaatttaaaaagacactgaaaattcactcttttcattgagtttgggtacgctccatttaggctaagctctattta 36955558  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 36955707 - 36955666
Alignment:
Q  243 tttattgttttaaaaactgaaatacgaaaactgccaaaagct 284  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  36955707 tttattattttaaaaactgaaatatgaaaactgccaaaagct 36955666  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 34764015 - 34764054
Alignment:
Q  243 tttattgttttaaaaactgaaatacgaaaactgccaaaag 282  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  34764015 tttattgttttaaaaactgaaaaacggaaactgccaaaag 34764054  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 31193966 - 31194002
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  31193966 agttcgggtatgctccatttaggctaagctccattta 31194002  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 31194265 - 31194229
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  31194265 agttcgggtatgctccatttaggctaagctccattta 31194229  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 31547581 - 31547633
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccatttaggatttggattcaaga 407  Q
    ||||||| || |||||||||||||||||||||||||||  |||||||||||||    
T  31547581 agttcggatatgctccatttagactaagctccatttagagtttggattcaaga 31547633  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 33368121 - 33368160
Alignment:
Q  243 tttattgttttaaaaactgaaatacgaaaactgccaaaag 282  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  33368121 tttattgttttaaaaactgaaaaacgaaaactgccaaaag 33368160  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 6911346 - 6911302
Alignment:
Q  347 tttcattaagttcgggtacgctccatttagactaagctccattta 391  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||    
T  6911346 tttcattgagttcgggtacgctcaatttaggctaagctccattta 6911302  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 26297324 - 26297376
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccatttaggatttggattcaaga 407  Q
    |||| ||||| ||||||||||| |||||||||||||||| ||||||| |||||    
T  26297324 agtttgggtatgctccatttaggctaagctccatttagggtttggatgcaaga 26297376  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 9551525 - 9551489
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||| |||||||||||||||| |||||||||    
T  9551525 agttcgggtatgctccatttagactaaactccattta 9551489  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 33491330 - 33491382
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccatttaggatttggattcaaga 407  Q
    |||||||||| | ||||||||| |||||||||||||||| ||||||| |||||    
T  33491330 agttcgggtatgttccatttaggctaagctccatttagggtttggatgcaaga 33491382  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 11741290 - 11741329
Alignment:
Q  243 tttattgttttaaaaactgaaatacgaaaactgccaaaag 282  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  11741290 tttattgttttaaaaactgaaaaacggaaactgccaaaag 11741329  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 407
Target Start/End: Original strand, 8237860 - 8237906
Alignment:
Q  361 ggtacgctccatttagactaagctccatttaggatttggattcaaga 407  Q
    |||| ||||||||||| ||||||||||||||||||| |||| |||||    
T  8237860 ggtatgctccatttaggctaagctccatttaggattaggatgcaaga 8237906  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 12493893 - 12493958
Alignment:
Q  65 tgcaccagcagatttaagtgtagtccatgtgagaagttgcaaacattaatacatctatgtgtcatt 130  Q
    |||||||||||||||||||| | ||||||| ||| | ||||||||||  || | ||||||||||||    
T  12493893 tgcaccagcagatttaagtgcaatccatgtaagatgctgcaaacattgttaaagctatgtgtcatt 12493958  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 4371455 - 4371491
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  4371455 agttcgggtatgctccatttaggctaagctccattta 4371491  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 22563211 - 22563247
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  22563211 agttcgggtatgctccatttaggctaagctccattta 22563247  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 13946934 - 13946978
Alignment:
Q  357 ttcgggtacgctccatttagactaagctccatttaggatttggat 401  Q
    |||||||| ||||||||||| |||||||||||||||| |||||||    
T  13946934 ttcgggtatgctccatttaggctaagctccatttagggtttggat 13946978  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 13021085 - 13021046
Alignment:
Q  243 tttattgttttaaaaactgaaatacgaaaactgccaaaag 282  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  13021085 tttattgttttaaaaactgaaaaacggaaactgccaaaag 13021046  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 387
Target Start/End: Complemental strand, 34622625 - 34622593
Alignment:
Q  355 agttcgggtacgctccatttagactaagctcca 387  Q
    |||||||||| ||||||||||||||||||||||    
T  34622625 agttcgggtatgctccatttagactaagctcca 34622593  T

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Target: scaffold0311 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 9267 - 9306
Alignment:
Q  243 tttattgttttaaaaactgaaatacgaaaactgccaaaag 282  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  9267 tttattgttttaaaaactgaaaaacggaaactgccaaaag 9306  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 53881218 - 53881257
Alignment:
Q  243 tttattgttttaaaaactgaaatacgaaaactgccaaaag 282  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  53881218 tttattgttttaaaaactgaaaaacggaaactgccaaaag 53881257  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 46883425 - 46883471
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccatttaggatttggat 401  Q
    |||||||||| ||||||||||| |||| ||||||||||| |||||||    
T  46883425 agttcgggtatgctccatttaggctaaactccatttagggtttggat 46883471  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 38499820 - 38499856
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  38499820 agttcgggtatgctccatttaggctaagctccattta 38499856  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 38500121 - 38500085
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  38500121 agttcgggtatgctccatttaggctaagctccattta 38500085  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 19318519 - 19318483
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  19318519 agttcgggtatgctccatttaggctaagctccattta 19318483  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 25048324 - 25048288
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccattta 391  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  25048324 agttcgggtatgctccatttaggctaagctccattta 25048288  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 33277316 - 33277368
Alignment:
Q  355 agttcgggtacgctccatttagactaagctccatttaggatttggattcaaga 407  Q
    |||||||||| ||||||||||| |||| || |||||||| ||||||| |||||    
T  33277316 agttcgggtatgctccatttaggctaaacttcatttagggtttggatgcaaga 33277368  T

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