View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_19 (Length: 498)
Name: NF0791_low_19
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 50 - 401
Target Start/End: Original strand, 40053317 - 40053676
Alignment:
| Q |
50 |
atacgtaaataaaagtaatatagttctaatgctatgttaagacatacaccgtacatattaacatagttagagaagatttaagacggataaattgagacag |
149 |
Q |
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| T |
40053317 |
atacgtgaataaaaataatatagttctaatgctatgttaagacatacaccgtacatattaacatagttagagaagatttaagacggataaattgagacag |
40053416 |
T |
|
| Q |
150 |
atgctcagacacaagagctgatactgtagaagcaaaactcatagttcctcttagtataagaaaaattggctacatagcgtc--------cttgtttctag |
241 |
Q |
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| T |
40053417 |
atgctcagacacaagagctgatattgtagaagcaaaactcatagttcctcttagtataagaaaaattggctacatagcgtccttgtttgcttgtttctag |
40053516 |
T |
|
| Q |
242 |
caacataaattttgcctaaaatctattcataattctgcgtgataattttcaagttatgtttgttcctaagtatacattagtattgccnnnnnnnnnnnnn |
341 |
Q |
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| T |
40053517 |
caacataaattttgcctaaaatctattcctaagactgcgtgataattttgaagttatgtttgttcctaagtatacattagtattgccttttttctttctt |
40053616 |
T |
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| Q |
342 |
ataaagaagtaagtgaaacaaagtttcaaatctatcaactaagtccctcttagtaccccc |
401 |
Q |
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| T |
40053617 |
ataaagaagtaagtgaaacaaagtttcaaatctatcaactaagtccctcttagtaccccc |
40053676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 36998348 - 36998296
Alignment:
| Q |
7 |
cactttgcttgaataaataaaaaattaggagagtttaataattatacgtaaat |
59 |
Q |
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| T |
36998348 |
cactttgcttgaataaataaaaaattaggagagtttaataattatacataaat |
36998296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 49107749 - 49107642
Alignment:
| Q |
169 |
gatactgtagaagcaaaactcatagttcctcttagtataagaaaaattggctacatagcgtccttg--------tttctagcaacataaattttgcctaa |
260 |
Q |
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|||| ||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||| |||||||| ||| |
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| T |
49107749 |
gatattgttgaaccaaaactcatagttcctcttagtataagcaaacttggctacatagcatccttgtttgcttctttctagcaacattaattttgcataa |
49107650 |
T |
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| Q |
261 |
aatctatt |
268 |
Q |
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|||||||| |
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| T |
49107649 |
aatctatt |
49107642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 27801106 - 27801054
Alignment:
| Q |
156 |
agacacaagagctgatact-gtagaagcaaaactcatagttcctcttagtata |
207 |
Q |
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|||||||||||||||| | |||||||||||||||| |||||||||||||||| |
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| T |
27801106 |
agacacaagagctgatgttagtagaagcaaaactcaaagttcctcttagtata |
27801054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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