View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_20 (Length: 489)
Name: NF0791_low_20
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 35 - 460
Target Start/End: Complemental strand, 1351185 - 1350760
Alignment:
| Q |
35 |
atcataggcaccccattacttatactttcaattgttgaattccaaccacagtgactcaaaaaccctcccactgctttgtgctttagaactttctcttgtg |
134 |
Q |
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| T |
1351185 |
atcaaaggcaccccattacttatactttcaattgttgaattccaaccacagtgactcaaaaaccctcccactgctttgtgctttagaactttctcttgtg |
1351086 |
T |
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| Q |
135 |
gacaccaacctaccattagtcctctatctttggtttcttccacaatttcttgtggcacaagcaatgtttcactttcacccttaactaaatcaggcctaat |
234 |
Q |
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| T |
1351085 |
gacaccaacctaccattagtcctctatctttggtttcttccacaatttcttgtggcacaagcaatgtttcactttcacccttaactaaatcaggcctaat |
1350986 |
T |
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| Q |
235 |
cacccacaagaactttttcttactatttgctaatccccatgccaattcaactagctggttatacttcatgactataacacttccaaaattcacatagaga |
334 |
Q |
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| T |
1350985 |
cacccacaagaactttttcttgctatttgctaatccccatgccaattcaactagctggttatacttcatgactataacacttccaaaattcacatagaga |
1350886 |
T |
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| Q |
335 |
acagaattttcttcctgtgaatctagccatttgagacactcactctcttctttccacaaattgcattgaatagattcaaatccattattttctgaaattt |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350885 |
acagaattttcttcctgtgaatctagccatttgagacactcactctcttctttccacaaattgcattgaatagattcaaatccattattttctgaaattt |
1350786 |
T |
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| Q |
435 |
tatcaaggaacaaatcaagtgggcct |
460 |
Q |
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| T |
1350785 |
tatcaaggaacaaatcaagtgggcct |
1350760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 4560855 - 4560896
Alignment:
| Q |
122 |
actttctcttgtggacaccaacctaccattagtcctctatct |
163 |
Q |
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| T |
4560855 |
actttctcttgtggacaccaacttgctattagtcctctatct |
4560896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 4574657 - 4574698
Alignment:
| Q |
122 |
actttctcttgtggacaccaacctaccattagtcctctatct |
163 |
Q |
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| T |
4574657 |
actttctcttgtggacaccaacttgctattagtcctctatct |
4574698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 1965248 - 1965204
Alignment:
| Q |
58 |
actttcaattgttgaattccaaccacagtgactcaaaaaccctcc |
102 |
Q |
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| T |
1965248 |
actttcaagggttgagttccaaccacagtgactcaagaaccctcc |
1965204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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