View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791_low_23 (Length: 486)
Name: NF0791_low_23
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 37 - 457
Target Start/End: Original strand, 36998286 - 36998706
Alignment:
| Q |
37 |
agcgagtatactttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaataacaactccatgagagaatatcactgaatgtcc |
136 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || |||| |||||||| |
|
|
| T |
36998286 |
agcgagtataatttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaattacaactccatgtgagcatgtcacagaatgtcc |
36998385 |
T |
|
| Q |
137 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36998386 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
36998485 |
T |
|
| Q |
237 |
agaggaaaacaaacatacgaccacataaactaaaccttattttgtgtgtaatgaagcagtttgctatcattgtattcatttataagtgccaccagtggta |
336 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36998486 |
agaggaaaacaaacatacaaccacataaactaaaccttattttgtgtgtaatgaagcagttagctatcattgtattcatttataagtaccaccagtggtg |
36998585 |
T |
|
| Q |
337 |
taccctgtggcatttggatttccaccaacacgggtattatgggccgtggcggtcccatctgtgcctctattagtcccaatagggtgtgagcccaccacac |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36998586 |
taccctgtggcatttggatttccaccaacacgggtattatgggccgtggcggtcccatctgtgcctctattagtcccaatagggtgtgagcccaccacac |
36998685 |
T |
|
| Q |
437 |
cgtcgacgacatggcccgtgg |
457 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36998686 |
cgtcgacgacatggcccgtgg |
36998706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36998219 - 36998251
Alignment:
| Q |
1 |
aaaacattgttctatttaattaaaaatagaaaa |
33 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
36998219 |
aaaacattgttctatttaattaaaaatacaaaa |
36998251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University