View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_3 (Length: 736)

Name: NF0791_low_3
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_3
NF0791_low_3
[»] chr5 (1 HSPs)
chr5 (99-731)||(1444635-1445267)


Alignment Details
Target: chr5 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 99 - 731
Target Start/End: Original strand, 1444635 - 1445267
Alignment:
Q  99 gcggtcgcaaccaccgccaatcctttctacaccagcgctgaaatcttcaaacaaataaaagcttctgaaacaaaactcattattacacaagcaatgtacg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444635 gcggtcgcaaccaccgccaatcctttctacaccagcgctgaaatcttcaaacaaataaaagcttctgaaacaaaactcattattacacaagcaatgtacg 1444734  T
Q  199 ttgataaactccgtcaaaaggatcaggttggtgcagaatttgactttaaggtgataacaaccgacgaaccaccgctgaattgtttacatttttcgatgat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1444735 ttgataaactccgtcaaaaggatcaggttggtgcagaatttgactttaaggtgataacaaccgacgaaccaccgctgaattgtttacatttttcggtgat 1444834  T
Q  299 ttctgagtcgaacgaagaggatattccggtagtggagatcgatccagaagacgcggtggcgctaccattttcttcaggaacaacaggattacctaaagga 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444835 ttctgagtcgaacgaagaggatattccggtagtggagatcgatccagaagacgcggtggcgctaccattttcttcaggaacaacaggattacctaaagga 1444934  T
Q  399 gtgattctaacacacaagagtttaacaacaagtgtggcacaacaagtggatggagagaatccaaatctacatttaacaacagaagatgttcttctttgtg 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444935 gtgattctaacacacaagagtttaacaacaagtgtggcacaacaagtggatggagagaatccaaatctacatttaacaacagaagatgttcttctttgtg 1445034  T
Q  499 ttcttccattgtttcatatattttctctcaacagtgtgttattgtgtgcactgagagcaggaagtggggttttgttgatgcataaatttgagattgggac 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1445035 ttcttccattgtttcatatattttctctcaacagtgtgttattgtgtgcactgagagcaggaagtggggttttgttgatgcataaatttgagattgggac 1445134  T
Q  599 tttgcttggtcttatacaaaaacataaggttacggtggcgatggttgttccgccgttggttttggcgttggcgaagagtccgtcggtggcggagtttgat 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1445135 tttgcttggtcttatacaaaaacataaggttacggtggcgatggttgttccgccgttggttttggcgttggcgaagagtccgtcggtggcggagtttgat 1445234  T
Q  699 ctgagttcaataaggttggtgttctctgctgct 731  Q
    ||||||||||||||||||||||| |||| ||||    
T  1445235 ctgagttcaataaggttggtgttgtctggtgct 1445267  T

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