View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_30 (Length: 452)
Name: NF0791_low_30
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 41348358 - 41348628
Alignment:
| Q |
19 |
gcagcaacacagagataactcatatataaagagaaaacagtcaactctttcttaattcatcatctatttttagttgttaaaatcaagtaannnnnnnnng |
118 |
Q |
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| T |
41348358 |
gcagcaacacagagataactcatatataaagagaaaacagtcaactctttcttaattcatcatctatttttagttgttaaaatcaagtaatttttttt-g |
41348456 |
T |
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| Q |
119 |
gacgtgctaacttatgcctnnnnnnnnnnnnntaaacagatgaaatcttcgtgtacctatagaataagtatacaggtaaaatcagctctaatgaaagaaa |
218 |
Q |
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| T |
41348457 |
gacgtgctaccttatgcctaaaaaaacaaaaataaacagatgaaatcttcgtgtacctatagaataagtatacaggtaaaatcagctctaatgaaagaaa |
41348556 |
T |
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| Q |
219 |
ttagaagccaataaaattctgttttattgcacttattttttatactatcggttagcttatctgtgttgtact |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41348557 |
ttagaagccaataaaattctgttttattgcacttattttttatactatcggttagcatatctgtgttgtact |
41348628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 347 - 446
Target Start/End: Original strand, 41348686 - 41348785
Alignment:
| Q |
347 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaacatgacagaaatggaacatgctccgatgccaagtattcatctcac |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41348686 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaacatgacagaaatggaacatgctccgatgccaagtattcatatcac |
41348785 |
T |
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