View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_32 (Length: 441)

Name: NF0791_low_32
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_32
NF0791_low_32
[»] chr4 (6 HSPs)
chr4 (19-441)||(30768739-30769161)
chr4 (122-198)||(29195095-29195171)
chr4 (135-198)||(5795422-5795485)
chr4 (122-186)||(46295109-46295174)
chr4 (122-173)||(32992637-32992689)
chr4 (142-186)||(39030133-39030177)
[»] chr8 (5 HSPs)
chr8 (135-200)||(26688863-26688928)
chr8 (135-198)||(11793534-11793597)
chr8 (135-198)||(11979252-11979315)
chr8 (148-198)||(22268959-22269009)
chr8 (122-198)||(968362-968439)
[»] chr7 (9 HSPs)
chr7 (122-198)||(22760863-22760940)
chr7 (135-198)||(7801180-7801243)
chr7 (148-198)||(48125200-48125250)
chr7 (135-198)||(5273603-5273666)
chr7 (135-198)||(5579247-5579310)
chr7 (143-181)||(46279031-46279069)
chr7 (135-180)||(3968655-3968700)
chr7 (135-200)||(31835190-31835255)
chr7 (240-287)||(654705-654750)
[»] chr5 (5 HSPs)
chr5 (122-198)||(16773807-16773884)
chr5 (143-199)||(19373238-19373294)
chr5 (122-186)||(1410659-1410723)
chr5 (239-271)||(37397806-37397838)
chr5 (240-272)||(39229207-39229239)
[»] chr1 (8 HSPs)
chr1 (148-199)||(952510-952561)
chr1 (135-186)||(4824983-4825034)
chr1 (143-198)||(37046985-37047040)
chr1 (150-198)||(34228874-34228922)
chr1 (143-198)||(15581162-15581217)
chr1 (153-198)||(1690108-1690153)
chr1 (135-199)||(19940885-19940949)
chr1 (143-199)||(24857851-24857907)
[»] chr2 (4 HSPs)
chr2 (122-180)||(30359672-30359730)
chr2 (148-198)||(32106566-32106616)
chr2 (123-198)||(12994376-12994452)
chr2 (240-287)||(28669025-28669070)
[»] chr3 (5 HSPs)
chr3 (138-198)||(3054994-3055054)
chr3 (143-197)||(18316519-18316573)
chr3 (143-196)||(42799768-42799821)
chr3 (122-173)||(16900680-16900732)
chr3 (122-198)||(42430335-42430409)
[»] chr6 (2 HSPs)
chr6 (122-200)||(28028528-28028606)
chr6 (122-198)||(33549104-33549181)
[»] scaffold0258 (1 HSPs)
scaffold0258 (122-199)||(15322-15400)


Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 30769161 - 30768739
Alignment:
Q  19 aacctgtgagaaaacaatcaaacaaacccttagaagaagaaaattaagcataaaagtacttggagtataaaataaacctgtgagaaaaaatcaaacaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769161 aacctgtgagaaaacaatcaaacaaacccttagaagaagaaaattaagcataaaagtacttggagtataaaataaacctgtgagaaaaaatcaaacaaac 30769062  T
Q  119 cctagaatcgaactgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttgagcacaaattaatctacgt 218  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30769061 cctagaatcgaactgcgaccttgatgagaagtacactccaaggtcccaagtcaactccacctgaccaattcaagtgggttgagcacaaattaatctacgt 30768962  T
Q  219 cccatattataacnnnnnnnaaaaactcggtatccgatctaaaaaccgactaatatccgaggggaccaactccatcatccactagcagagatccatttaa 318  Q
    |||||||||||||       ||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  30768961 cccatattataactttttttaaaaactcggtatccgaccaaaaaatcgactaatatccggggggaccaactccattatccactagcagatatccatttaa 30768862  T
Q  319 agccagagcgacacctattataattaatgagtagcatagtcaacacctttaaaacaattcgtaacttttgtcctaaaaagaagaaggatttcaaagggca 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |||| |||||||||||    
T  30768861 agccagagcgacacctattataattaatgagtagcatagtcaacacctttaaaaaaatacataacttttgtcctaaaaagaagtaggacttcaaagggca 30768762  T
Q  419 catgaatcataacaacaacactt 441  Q
    |||||||||||||||||||||||    
T  30768761 catgaatcataacaacaacactt 30768739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 29195171 - 29195095
Alignment:
Q  122 agaatcgaact-gcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||| |||| ||||||| ||||  ||||||||||    
T  29195171 agaatcgaacttgcgaccttga-gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 29195095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 5795422 - 5795485
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||| ||| |||| |||||||||| |||||||||| ||||||||||||  ||||||||||    
T  5795422 gaccttgaggaggagcatactccaaggtgccaagtcaacaccaccagaccaacccaagtgggtt 5795485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 46295174 - 46295109
Alignment:
Q  122 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaa 186  Q
    |||||||||| || |||||||| ||| |||||||||||| |||||||| |||| | ||||||||||    
T  46295174 agaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaacactaccagaccaa 46295109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 32992689 - 32992637
Alignment:
Q  122 agaatcgaact-gcgaccttgaagagaagcacactccaaggtcccaagtcaac 173  Q
    ||||||||||| | |||||||| ||| ||||||||||||||||||||| ||||    
T  32992689 agaatcgaacttgagaccttgaggaggagcacactccaaggtcccaagccaac 32992637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 39030133 - 39030177
Alignment:
Q  142 aagagaagcacactccaaggtcccaagtcaactccaccagaccaa 186  Q
    ||||| ||||||||||||||||||||| |||| ||||||| ||||    
T  39030133 aagaggagcacactccaaggtcccaagccaacaccaccaggccaa 39030177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 26688928 - 26688863
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttga 200  Q
    |||||||| ||| ||||||||||||||||||||| |||| ||||||| ||||  ||||||||||||    
T  26688928 gaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttga 26688863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 11793534 - 11793597
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||| ||| |||||||||||||||||||||  ||| |||| |||||||  ||||||||||    
T  11793534 gaccttgaggaggagcacactccaaggtcccaagcgaacaccacaagaccaacccaagtgggtt 11793597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 11979315 - 11979252
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    ||||||||  ||||||||||| ||||||||||||||||| || ||| |||||  ||||||||||    
T  11979315 gaccttgagaagaagcacacttcaaggtcccaagtcaacaccgccaaaccaacccaagtgggtt 11979252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 22268959 - 22269009
Alignment:
Q  148 agcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    ||||||||||||||||||||| |||| ||||||| ||||  ||||||||||    
T  22268959 agcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 22269009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 968439 - 968362
Alignment:
Q  122 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||||| || ||||| || ||| |||||||||| |||||||||| |||  ||||||| |||| |||||||||||    
T  968439 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 22760940 - 22760863
Alignment:
Q  122 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||||| || |||||||| ||| |||||||||| ||||||||||||||  ||||||||||||  ||||||||||    
T  22760940 agaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 7801243 - 7801180
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||||||| |||||||||| ||||||||||||||  ||||||| ||||  ||||||||||    
T  7801243 gaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 48125200 - 48125250
Alignment:
Q  148 agcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    ||||||||||||||||||||| |||| ||||||||||||  ||||||||||    
T  48125200 agcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggtt 48125250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 5273603 - 5273666
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||| ||| ||||||||| ||||||||||| |||| ||||||| ||||  ||||||||||    
T  5273603 gaccttgaggaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtgggtt 5273666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 5579247 - 5579310
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||| ||| ||||||||||||||||||||| |||| |||||||  |||  ||||||||||    
T  5579247 gaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggtcaacccaagtgggtt 5579310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 46279069 - 46279031
Alignment:
Q  143 agagaagcacactccaaggtcccaagtcaactccaccag 181  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  46279069 agaggagcacactccaaggtccaaagtcaactccaccag 46279031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 3968655 - 3968700
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccacca 180  Q
    |||||||| ||| ||||||||| |||||||||||||||| ||||||    
T  3968655 gaccttgaggaggagcacactcgaaggtcccaagtcaacaccacca 3968700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 31835255 - 31835190
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttga 200  Q
    |||||||| ||| |||||||||||||  |||||| |||| ||||||| ||||  ||||||||||||    
T  31835255 gaccttgaggaggagcacactccaagcacccaagccaacaccaccaggccaacccaagtgggttga 31835190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 654705 - 654750
Alignment:
Q  240 aaaactcggtatccgatctaaaaaccgactaatatccgaggggaccaa 287  Q
    |||||||||||||||||| || |||||||||  |||||||||||||||    
T  654705 aaaactcggtatccgatccaagaaccgacta--atccgaggggaccaa 654750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 16773884 - 16773807
Alignment:
Q  122 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||||| || ||||| || ||| |||||||||| ||||||||||||||  |||||||||||| |||||||||||    
T  16773884 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 19373294 - 19373238
Alignment:
Q  143 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 199  Q
    |||| |||||||||||||||| |||| |||| ||||||| |||| ||||||||||||    
T  19373294 agagtagcacactccaaggtctcaagccaacaccaccaggccaactcaagtgggttg 19373238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 1410659 - 1410723
Alignment:
Q  122 agaatcgaactgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaa 186  Q
    |||||||||||| ||||| || ||| |||||||||| |  |||||||||||  ||||||||||||    
T  1410659 agaatcgaactgagacctcgaggaggagcacactcccatatcccaagtcaataccaccagaccaa 1410723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 37397838 - 37397806
Alignment:
Q  239 aaaaactcggtatccgatctaaaaaccgactaa 271  Q
    ||||||||||||||||||||||||| |||||||    
T  37397838 aaaaactcggtatccgatctaaaaatcgactaa 37397806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 39229207 - 39229239
Alignment:
Q  240 aaaactcggtatccgatctaaaaaccgactaat 272  Q
    |||||||| ||||||||||||||||||||||||    
T  39229207 aaaactcgatatccgatctaaaaaccgactaat 39229239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 952561 - 952510
Alignment:
Q  148 agcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 199  Q
    |||||||||| |||||||||| |||| |||||||||||| ||||||||||||    
T  952561 agcacactcccaggtcccaagccaacaccaccagaccaactcaagtgggttg 952510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 4825034 - 4824983
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaa 186  Q
    |||||||||||| ||||||||||||||||||||| |||| ||| ||||||||    
T  4825034 gaccttgaagaggagcacactccaaggtcccaagccaacaccatcagaccaa 4824983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 37047040 - 37046985
Alignment:
Q  143 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||  ||||||||||    
T  37047040 agaggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggtt 37046985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 34228922 - 34228874
Alignment:
Q  150 cacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||| |||||||||| |||| |||||||||||| |||||||||||    
T  34228922 cacactccgaggtcccaagccaacaccaccagaccaactcaagtgggtt 34228874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 15581162 - 15581217
Alignment:
Q  143 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||| ||||||||||||||||||||| |||| ||||||| ||||  ||||||||||    
T  15581162 agaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 15581217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 1690108 - 1690153
Alignment:
Q  153 actccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    ||||| |||||||||| |||  ||||||||||||||||||||||||    
T  1690108 actcccaggtcccaagccaataccaccagaccaattcaagtgggtt 1690153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 19940885 - 19940949
Alignment:
Q  135 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 199  Q
    |||||| | ||| |||||||||||||| ||||||  ||| ||||||||||||  |||||||||||    
T  19940885 gaccttaaggaggagcacactccaaggacccaagctaacaccaccagaccaacccaagtgggttg 19940949  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 24857851 - 24857907
Alignment:
Q  143 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 199  Q
    |||||||| |||||||||||||| || |||| ||||||| ||||  |||||||||||    
T  24857851 agagaagcccactccaaggtccctagccaacaccaccaggccaacccaagtgggttg 24857907  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 30359730 - 30359672
Alignment:
Q  122 agaatcgaactgcgaccttgaagagaagcacactccaaggtcccaagtcaactccacca 180  Q
    ||||||||| || |||||||| ||| ||||||||||||||||||||| |||| ||||||    
T  30359730 agaatcgaaatgagaccttgaggaggagcacactccaaggtcccaagccaacaccacca 30359672  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 32106616 - 32106566
Alignment:
Q  148 agcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||||||||||||||||||||| ||||||| ||||  ||||||||||    
T  32106616 agcacactccaaggtcccaagtcaacaccaccaggccaacccaagtgggtt 32106566  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 12994376 - 12994452
Alignment:
Q  123 gaatcgaact-gcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||||| | |||||| | ||| |||||||||| ||||||||||||||  |||| ||||||| ||||| |||||    
T  12994376 gaatcgaacttgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaagcgggtt 12994452  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 28669070 - 28669025
Alignment:
Q  240 aaaactcggtatccgatctaaaaaccgactaatatccgaggggaccaa 287  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||    
T  28669070 aaaactcggtatccgatccaaaaatcgacta--atccgaggggaccaa 28669025  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 3055054 - 3054994
Alignment:
Q  138 cttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    ||||| ||||||||| ||||||||||||||| |||| ||||||| ||||  ||||||||||    
T  3055054 cttgaggagaagcacgctccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 3054994  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 18316519 - 18316573
Alignment:
Q  143 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggt 197  Q
    |||| ||||||||||||||||||||| || | ||||||||||||  |||||||||    
T  18316519 agaggagcacactccaaggtcccaagccagcaccaccagaccaacccaagtgggt 18316573  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 42799768 - 42799821
Alignment:
Q  143 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtggg 196  Q
    |||| ||||||||||||||||||||| |||| ||||||| ||||  ||||||||    
T  42799768 agaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtggg 42799821  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 16900680 - 16900732
Alignment:
Q  122 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaac 173  Q
    |||||||||| || |||||||| ||| ||||||||||||||||||||| ||||    
T  16900680 agaatcgaacatgagaccttgacgaggagcacactccaaggtcccaagccaac 16900732  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 42430409 - 42430335
Alignment:
Q  122 agaatcgaactgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||||||  |||||||| ||| ||||||||||||| |||||||||||  ||||||| ||||  ||||||||||    
T  42430409 agaatcgaactaagaccttga-gaggagcacactccaagatcccaagtcaataccaccag-ccaacccaagtgggtt 42430335  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 28028606 - 28028528
Alignment:
Q  122 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttga 200  Q
    |||||||||| || |||||||| ||| ||| ||||| |||||||||||||||| ||||||| ||||  ||||||||||||    
T  28028606 agaatcgaacatgagaccttga-gaggagctcactcaaaggtcccaagtcaacaccaccaggccaacccaagtgggttga 28028528  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 33549181 - 33549104
Alignment:
Q  122 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 198  Q
    |||||||||| || ||||| || ||| |||||||||| |||||||||| |||  ||||||||||||  ||||||||||    
T  33549181 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

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Target: scaffold0258 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 15322 - 15400
Alignment:
Q  122 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 199  Q
    |||||||||| || ||||| || ||| |||||||||| |||||||||| |||  ||||||||||||  |||||||||||    
T  15322 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggttg 15400  T

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